Microbial community assembly and metabolic function during mammalian corpse decomposition

作者: Jessica L Metcalf , Zhenjiang Zech Xu , Sophie Weiss , Simon Lax , Will Van Treuren

DOI: 10.1126/SCIENCE.AAD2646

关键词:

摘要: … Soil type was not a dominant factor driving community development, and the process of … Predicted functions of bacterial communities increased in relative abundance of genes for amino …

参考文章(27)
J. G. Caporaso, K. Bittinger, F. D. Bushman, T. Z. DeSantis, G. L. Andersen, R. Knight, PyNAST: a flexible tool for aligning sequences to a template alignment Bioinformatics. ,vol. 26, pp. 266- 267 ,(2010) , 10.1093/BIOINFORMATICS/BTP636
Michael Kaspari, Milton N. Garcia, Kyle E. Harms, Mirna Santana, S. Joseph Wright, Joseph B. Yavitt, Multiple nutrients limit litterfall and decomposition in a tropical forest. Ecology Letters. ,vol. 11, pp. 35- 43 ,(2007) , 10.1111/J.1461-0248.2007.01124.X
Morgan G I Langille, Jesse Zaneveld, J Gregory Caporaso, Daniel McDonald, Dan Knights, Joshua A Reyes, Jose C Clemente, Deron E Burkepile, Rebecca L Vega Thurber, Rob Knight, Robert G Beiko, Curtis Huttenhower, Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences Nature Biotechnology. ,vol. 31, pp. 814- 821 ,(2013) , 10.1038/NBT.2676
Krista L. McGuire, Sara G. Payne, Matthew I. Palmer, Caitlyn M. Gillikin, Dominique Keefe, Su Jin Kim, Seren M. Gedallovich, Julia Discenza, Ramya Rangamannar, Jennifer A. Koshner, Audrey L. Massmann, Giulia Orazi, Adam Essene, Jonathan W. Leff, Noah Fierer, Digging the New York City Skyline: soil fungal communities in green roofs and city parks. PLOS ONE. ,vol. 8, pp. 1- 13 ,(2013) , 10.1371/JOURNAL.PONE.0058020
Christian L. Lauber, Micah Hamady, Rob Knight, Noah Fierer, Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale. Applied and Environmental Microbiology. ,vol. 75, pp. 5111- 5120 ,(2009) , 10.1128/AEM.00335-09
Elizabeth A. Dinsdale, Robert A. Edwards, Dana Hall, Florent Angly, Mya Breitbart, Jennifer M. Brulc, Mike Furlan, Christelle Desnues, Matthew Haynes, Linlin Li, Lauren McDaniel, Mary Ann Moran, Karen E. Nelson, Christina Nilsson, Robert Olson, John Paul, Beltran Rodriguez Brito, Yijun Ruan, Brandon K. Swan, Rick Stevens, David L. Valentine, Rebecca Vega Thurber, Linda Wegley, Bryan A. White, Forest Rohwer, Functional metagenomic profiling of nine biomes Nature. ,vol. 452, pp. 629- 632 ,(2008) , 10.1038/NATURE06810
Jessica L Metcalf, Laura Wegener Parfrey, Antonio Gonzalez, Christian L Lauber, Dan Knights, Gail Ackermann, Gregory C Humphrey, Matthew J Gebert, Will Van Treuren, Donna Berg-Lyons, Kyle Keepers, Yan Guo, James Bullard, Noah Fierer, David O Carter, Rob Knight, A microbial clock provides an accurate estimate of the postmortem interval in a mouse model system eLife. ,vol. 2, ,(2013) , 10.7554/ELIFE.01104
Philip S. Barton, Saul A. Cunningham, David B. Lindenmayer, Adrian D. Manning, The role of carrion in maintaining biodiversity and ecological processes in terrestrial ecosystems Oecologia. ,vol. 171, pp. 761- 772 ,(2013) , 10.1007/S00442-012-2460-3
V. Anne Smith, Jing Yu, Tom V. Smulders, Alexander J. Hartemink, Erich D. Jarvis, Computational Inference of Neural Information Flow Networks PLOS Computational Biology. ,vol. 2, ,(2005) , 10.1371/JOURNAL.PCBI.0020161
John C. Moore, Eric L. Berlow, David C. Coleman, Peter C. Ruiter, Quan Dong, Alan Hastings, Nancy Collins Johnson, Kevin S. McCann, Kim Melville, Peter J. Morin, Knute Nadelhoffer, Amy D. Rosemond, David M. Post, John L. Sabo, Kate M. Scow, Michael J. Vanni, Diana H. Wall, Detritus, trophic dynamics and biodiversity Ecology Letters. ,vol. 7, pp. 584- 600 ,(2004) , 10.1111/J.1461-0248.2004.00606.X