Gene expression profiling reveals stromal genes expressed in common between Barrett's esophagus and adenocarcinoma.

作者: Ying Hao , George Triadafilopoulos , Peyman Sahbaie , Harvey S. Young , M. Bishr Omary

DOI: 10.1053/J.GASTRO.2006.04.026

关键词:

摘要: Background & Aims: Barrett's esophagus is a precursor of esophageal adenocarcinoma. DNA microarrays that enable genome-wide assessment gene expression enhance the identification specific genes as well patterns are expressed by and adenocarcinoma compared with normal tissues. length has also been identified risk factor for progression to adenocarcinoma, but whether there intrinsic biological differences between short-segment long-segment can be explored microarrays. Methods: Gene profiles endoscopically obtained biopsy specimens or associated duodenum were 17 patients using Unsupervised supervised approaches data analysis defined similarities tissues correlations clinical phenotypes. Results: Each tissue displays unique profile distinguishes it from others. express set stromal distinct similar other cancers. Adenocarcinoma showed lower higher many esophagus. No difference in was found Conclusions: The provided current reveals candidate not previously identified. Stromal similar, indicating these changes precede malignant transformation.

参考文章(44)
Christine A. Iacobuzio-Donahue, Byungwoo Ryu, Ralph H. Hruban, Scott E. Kern, Exploring the Host Desmoplastic Response to Pancreatic Carcinoma: Gene Expression of Stromal and Neoplastic Cells at the Site of Primary Invasion American Journal of Pathology. ,vol. 160, pp. 91- 99 ,(2002) , 10.1016/S0002-9440(10)64353-2
Karl-Friedrich Becker, Ingrid Becker, Michael J. Atkinson, Jörg R. Siewert, Ulrike Reich, Hjalmar Nekarda, Heinz Höfler, E-cadherin gene mutations provide clues to diffuse type gastric carcinomas. Cancer Research. ,vol. 54, pp. 3845- 3852 ,(1994)
Saoussen Ftouh, Mohammed T. Akbar, Steven R. Hirsch, Jacqueline S. De Belleroche, Down‐regulation of Dickkopf 3, a regulator of the Wnt signalling pathway, in elderly schizophrenic subjects Journal of Neurochemistry. ,vol. 94, pp. 520- 530 ,(2005) , 10.1111/J.1471-4159.2005.03239.X
D Pati, C Keller, M Groudine, S E Plon, Reconstitution of a MEC1-independent checkpoint in yeast by expression of a novel human fork head cDNA. Molecular and Cellular Biology. ,vol. 17, pp. 3037- 3046 ,(1997) , 10.1128/MCB.17.6.3037
Lisa M. Coussens, Zena Werb, Inflammation and cancer Nature. ,vol. 420, pp. 860- 867 ,(2002) , 10.1038/NATURE01322
F M Selaru, T Zou, Y Xu, V Shustova, J Yin, Y Mori, F Sato, S Wang, A Olaru, D Shibata, B D Greenwald, M J Krasna, J M Abraham, S J Meltzer, Global gene expression profiling in Barrett's esophagus and esophageal cancer: a comparative analysis using cDNA microarrays Oncogene. ,vol. 21, pp. 475- 478 ,(2002) , 10.1038/SJ.ONC.1205111
G C Fletcher, S Patel, K Tyson, P J Adam, M Schenker, J A Loader, L Daviet, P Legrain, R Parekh, A L Harris, J A Terrett, hAG-2 and hAG-3, human homologues of genes involved in differentiation, are associated with oestrogen receptor-positive breast tumours and interact with metastasis gene C4.4a and dystroglycan. British Journal of Cancer. ,vol. 88, pp. 579- 585 ,(2003) , 10.1038/SJ.BJC.6600740
Douglas T Ross, Uwe Scherf, Michael B Eisen, Charles M Perou, Christian Rees, Paul Spellman, Vishwanath Iyer, Stefanie S Jeffrey, Matt Van de Rijn, Mark Waltham, Alexander Pergamenschikov, JC Lee, Deval Lashkari, Dari Shalon, Timothy G Myers, John N Weinstein, David Botstein, Patrick O Brown, None, Systematic variation in gene expression patterns in human cancer cell lines. Nature Genetics. ,vol. 24, pp. 227- 235 ,(2000) , 10.1038/73432
A.F. de Carvalho, N.A. Pinheiro, A.J.G. Simpson, S.J. de Souza, R.G. Correa, NABC1 (BCAS1): alternative splicing and downregulation in colorectal tumors. Genomics. ,vol. 65, pp. 299- 302 ,(2000) , 10.1006/GENO.2000.6172
Eric E. O'Neill, David Matallanas, Walter Kolch, Mammalian sterile 20-like kinases in tumor suppression: an emerging pathway Cancer Research. ,vol. 65, pp. 5485- 5487 ,(2005) , 10.1158/0008-5472.CAN-05-1453