Elucidation of the heme active site electronic structure affecting the unprecedented nitrite dismutase activity of the ferriheme b proteins, the nitrophorins

作者: Chunmao He , Hideaki Ogata , Wolfgang Lubitz

DOI: 10.1039/C6SC01019A

关键词:

摘要: Nitrophorins (NPs) catalyze the nitrite dismutation reaction that is unprecedented in ferriheme proteins. Despite progress studying mechanism, fundamental issues regarding correlation of structural features with dismutase activity NPs remain elusive. On other hand, it has been shown complexes are unique among those proteins since some their electron paramagnetic resonance (EPR) spectra show significant highly anisotropic low spin (HALS) signals large gmax values over 3.2. The origin HALS or models not well understood, especially cases where axial ligands than histidine present. In this study several mutations were introduced NP4. related coordination and investigated. As a result, EPR NP–nitrite found to be tightly correlated extent heme ruffling protonation state proximal His ligand—dictated by an extended H-bonding network at active site. Furthermore, established two factors essential determining NPs. These results may provide valuable guide for identifying designing novel similar activity.

参考文章(77)
Marcela Ayala, Redox Potential of Peroxidases Biocatalysis Based on Heme Peroxidases. pp. 61- 77 ,(2010) , 10.1007/978-3-642-12627-7_4
Jon O. Lundberg, Eddie Weitzberg, Mark T. Gladwin, The nitrate–nitrite–nitric oxide pathway in physiology and therapeutics Nature Reviews Drug Discovery. ,vol. 7, pp. 156- 167 ,(2008) , 10.1038/NRD2466
Wilfred Raymond Hagen, Biomolecular EPR spectroscopy ,(2008)
T.L. Poulos, J. Kraut, The stereochemistry of peroxidase catalysis. Journal of Biological Chemistry. ,vol. 255, pp. 8199- 8205 ,(1980) , 10.1016/S0021-9258(19)70630-9
B C Finzel, T L Poulos, J Kraut, Crystal structure of yeast cytochrome c peroxidase refined at 1.7-A resolution. Journal of Biological Chemistry. ,vol. 259, pp. 13027- 13036 ,(1984) , 10.1016/S0021-9258(18)90651-4
Pamela A. Williams, Vilmos Fülöp, Elspeth F. Garman, Neil F. W. Saunders, Stuart J. Ferguson, Janos Hajdu, Haem-ligand switching during catalysis in crystals of a nitrogen-cycle enzyme. Nature. ,vol. 389, pp. 406- 412 ,(1997) , 10.1038/38775
Xiao D. Ding, Andrzej Weichsel, John F. Andersen, Tatjana Kh. Shokhireva, Celia Balfour, Antonio J. Pierik, Bruce A. Averill, William R. Montfort, F. Ann Walker, Nitric Oxide Binding to the Ferri- and Ferroheme States of Nitrophorin 1, a Reversible NO-Binding Heme Protein from the Saliva of the Blood-Sucking Insect, Rhodnius prolixus Journal of the American Chemical Society. ,vol. 121, pp. 128- 138 ,(1999) , 10.1021/JA982979I
Sarah E. J. Bowman, Kara L. Bren, Variation and analysis of second-sphere interactions and axial histidinate character in c-type cytochromes. Inorganic Chemistry. ,vol. 49, pp. 7890- 7897 ,(2010) , 10.1021/IC100899K
Swati Basu, Rozalina Grubina, Jinming Huang, Jeanet Conradie, Zhi Huang, Anne Jeffers, Alice Jiang, Xiaojun He, Ivan Azarov, Ryan Seibert, Atul Mehta, Rakesh Patel, Stephen Bruce King, Neil Hogg, Abhik Ghosh, Mark T Gladwin, Daniel B Kim-Shapiro, Catalytic generation of N2O3 by the concerted nitrite reductase and anhydrase activity of hemoglobin. Nature Chemical Biology. ,vol. 3, pp. 785- 794 ,(2007) , 10.1038/NCHEMBIO.2007.46