Comparative genome analysis of Aspergillus flavus clinically isolated in Japan.

作者: Takahito Toyotome , Saho Hamada , Satoe Yamaguchi , Hiroki Takahashi , Daisuke Kondoh

DOI: 10.1093/DNARES/DSY041

关键词:

摘要: Aspergillus flavus is an important zoonotic pathogen and a well-known aflatoxin producer. strains that are prevalent in Japanese environments reported to be non-aflatoxigenic, although their productivity, especially among clinical isolates, has not been thoroughly investigated date. In this study, we sequenced the genomes of ten A. isolated Japan compared sequences with each other as well those oryzae RIB40 NRRL3357. The phylogenetic analysis based on identified SNPs indicated five were closer than contrast, isolates NRRL3357 RIB40, three found possess either entire or partial biosynthesis gene cluster NRRL3357-type. Furthermore, two actually produced B1 intermediate reaction leading formation. Three part cluster, while others retained RIB40-type cluster. genome data thus obtained may further explored utilized for comparative production environmental flavus.

参考文章(39)
T. J. Carver, K. M. Rutherford, M. Berriman, M.-A. Rajandream, B. G. Barrell, J. Parkhill, ACT: the Artemis comparison tool Bioinformatics. ,vol. 21, pp. 3422- 3423 ,(2005) , 10.1093/BIOINFORMATICS/BTI553
Yoko Kusuya, Azusa Takahashi-Nakaguchi, Hiroki Takahashi, Takashi Yaguchi, Draft Genome Sequence of the Pathogenic Filamentous Fungus Aspergillus udagawae Strain IFM 46973T Genome Announcements. ,vol. 3, ,(2015) , 10.1128/GENOMEA.00834-15
Sudhir Kumar, Glen Stecher, Koichiro Tamura, None, MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger datasets Molecular Biology and Evolution. ,vol. 33, pp. 1870- 1874 ,(2016) , 10.1093/MOLBEV/MSW054
Sheila Okoth, Marthe De Boevre, Arnau Vidal, José Diana Di Mavungu, Sofie Landschoot, Martina Kyallo, Joyce Njuguna, Jagger Harvey, Sarah De Saeger, Genetic and Toxigenic Variability within Aspergillus flavus Population Isolated from Maize in Two Diverse Environments in Kenya. Frontiers in Microbiology. ,vol. 9, pp. 57- ,(2018) , 10.3389/FMICB.2018.00057
J.C. Frisvad, V. Hubka, C.N. Ezekiel, S.-B. Hong, A. Nováková, A.J. Chen, M. Arzanlou, T.O. Larsen, F. Sklenář, W. Mahakarnchanakul, R.A. Samson, J. Houbraken, Taxonomy of Aspergillus section Flavi and their production of aflatoxins, ochratoxins and other mycotoxins Studies in Mycology. ,vol. 93, pp. 1- 63 ,(2019) , 10.1016/J.SIMYCO.2018.06.001
Takuro Kiyota, Ryoko Hamada, Kazutoshi Sakamoto, Kazuhiro Iwashita, Osamu Yamada, Shigeaki Mikami, Aflatoxin non-productivity of Aspergillus oryzae caused by loss of function in the aflJ gene product. Journal of Bioscience and Bioengineering. ,vol. 111, pp. 512- 517 ,(2011) , 10.1016/J.JBIOSC.2010.12.022
S. R. Harris, E. J. Feil, M. T. G. Holden, M. A. Quail, E. K. Nickerson, N. Chantratita, S. Gardete, A. Tavares, N. Day, J. A. Lindsay, J. D. Edgeworth, H. de Lencastre, J. Parkhill, S. J. Peacock, S. D. Bentley, Evolution of MRSA During Hospital Transmission and Intercontinental Spread Science. ,vol. 327, pp. 469- 474 ,(2010) , 10.1126/SCIENCE.1182395
Masayuki Machida, Kiyoshi Asai, Motoaki Sano, Toshihiro Tanaka, Toshitaka Kumagai, Goro Terai, Ken-Ichi Kusumoto, Toshihide Arima, Osamu Akita, Yutaka Kashiwagi, Keietsu Abe, Katsuya Gomi, Hiroyuki Horiuchi, Katsuhiko Kitamoto, Tetsuo Kobayashi, Michio Takeuchi, David W. Denning, James E. Galagan, William C. Nierman, Jiujiang Yu, David B. Archer, Joan W. Bennett, Deepak Bhatnagar, Thomas E. Cleveland, Natalie D. Fedorova, Osamu Gotoh, Hiroshi Horikawa, Akira Hosoyama, Masayuki Ichinomiya, Rie Igarashi, Kazuhiro Iwashita, Praveen Rao Juvvadi, Masashi Kato, Yumiko Kato, Taishin Kin, Akira Kokubun, Hiroshi Maeda, Noriko Maeyama, Jun-ichi Maruyama, Hideki Nagasaki, Tasuku Nakajima, Ken Oda, Kinya Okada, Ian Paulsen, Kazutoshi Sakamoto, Toshihiko Sawano, Mikio Takahashi, Kumiko Takase, Yasunobu Terabayashi, Jennifer R. Wortman, Osamu Yamada, Youhei Yamagata, Hideharu Anazawa, Yoji Hata, Yoshinao Koide, Takashi Komori, Yasuji Koyama, Toshitaka Minetoki, Sivasundaram Suharnan, Akimitsu Tanaka, Katsumi Isono, Satoru Kuhara, Naotake Ogasawara, Hisashi Kikuchi, Genome sequencing and analysis of Aspergillus oryzae Nature. ,vol. 438, pp. 1157- 1161 ,(2005) , 10.1038/NATURE04300