A statistical sampling algorithm for RNA secondary structure prediction
作者： Ye Ding , Charles E Lawrence
DOI: 10.1093/NAR/GKG938
关键词:
摘要: … of the ensemble of probable structures is of interest. We … secondary structures. The forward step of the algorithm computes the equilibrium partition functions of RNA secondary structures …
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Nan Sook Lee, Taikoh Dohjima, Gerhard Bauer, Haitang Li, Ming-Jie Li, Ali Ehsani, Paul Salvaterra, John Rossi, Expression of small interfering RNAs targeted against HIV-1 rev transcripts in human cells Nature Biotechnology. ,vol. 20, pp. 500- 505 ,(2002) , 10.1038/NBT0502-500
William S. Reznikoff, Larry. Gold, Maximizing gene expression Butterworths. ,(1986)
Christoph Flamm, Jan Cupal, Peter F. Stadler, Alexander Renner, Density of States, Metastable States, and Saddle Points: Exploring the Energy Landscape of an RNA Molecule intelligent systems in molecular biology. ,vol. 5, pp. 88- 91 ,(1997)
HERMANN WEIDNER, RAYMOND YUAN, DONALD M. CROTHERS, Does 5S RNA function by a switch between two secondary structures Nature. ,vol. 266, pp. 193- 194 ,(1977) , 10.1038/266193A0
Arthur L. Williams, Ignacio Tinoco, A dynamic programming algorithm for finding alternative RNA secondary structures. Nucleic Acids Research. ,vol. 14, pp. 299- 315 ,(1986) , 10.1093/NAR/14.1.299
Ralph E. Christoffersen, James McSwiggen, Danielle Konings, Application of computational technologies to ribozyme biotechnology products Journal of Molecular Structure-theochem. ,vol. 311, pp. 273- 284 ,(1994) , 10.1016/S0022-2860(10)80037-7
J. S. McCaskill, The equilibrium partition function and base pair binding probabilities for RNA secondary structure Biopolymers. ,vol. 29, pp. 1105- 1119 ,(1990) , 10.1002/BIP.360290621
Karen A. LeCuyer, Donald M. Crothers, The Leptomonas collosoma spliced leader RNA can switch between two alternate structural forms Biochemistry. ,vol. 32, pp. 5301- 5311 ,(1993) , 10.1021/BI00071A004
M Sohail, E.M Southern, Selecting optimal antisense reagents Advanced Drug Delivery Reviews. ,vol. 44, pp. 23- 34 ,(2000) , 10.1016/S0169-409X(00)00081-8
David H. Mathews, Jeffrey Sabina, Michael Zuker, Douglas H. Turner, Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure Journal of Molecular Biology. ,vol. 288, pp. 911- 940 ,(1999) , 10.1006/JMBI.1999.2700