Genetic variants in m6A modification core genes are associated with glioma risk in Chinese children

作者: Jing He , Huiran Lin , Huiran Lin , Ailing Luo , Zhenjian Zhuo

DOI: 10.1016/J.OMTO.2020.12.013

关键词:

摘要: Glioma is a highly heritable disease with strong genetic component. The N6-methyladenosine (m6A) modification core genes play important roles in the context of cancer. However, effects polymorphisms m6A on risk pediatric glioma remain undefined. Here, we intended to demonstrate relationship between 24 functional single-nucleotide (SNPs) eight and risk. Case-control design multinomial logistic regression were used develop models estimate while accounting for subtypes glioma. A total 171 cases 228 controls from South China genotyped using TaqMan assay. WTAP rs7766006, YTHDF2 rs3738067, FTO rs9939609 variants conferred statistically significant increased glioma, respectively. YTHDC1 rs2293595, rs3813832, rs8047395 associated inverse association associations more predominant stratification analyses certain subgroups. Functional annotations revealed that rs7766006 rs3738067 could be potential by increasing expression mRNA, Overall, these findings implicate as playing role etiology.

参考文章(43)
Benoit Moindrot, Andrea Cerase, Heather Coker, Osamu Masui, Anne Grijzenhout, Greta Pintacuda, Lothar Schermelleh, Tatyana B. Nesterova, Neil Brockdorff, A Pooled shRNA Screen Identifies Rbm15, Spen, and Wtap as Factors Required for Xist RNA-Mediated Silencing Cell Reports. ,vol. 12, pp. 562- 572 ,(2015) , 10.1016/J.CELREP.2015.06.053
Du-Il Jin, Sang Weon Lee, Myoung-Eun Han, Hyun-Jung Kim, Seon-Ae Seo, Gi-Yeong Hur, Shin Jung, Bong-Seon Kim, Sae-Ock Oh, Expression and roles of Wilms' tumor 1‐associating protein in glioblastoma Cancer Science. ,vol. 103, pp. 2102- 2109 ,(2012) , 10.1111/CAS.12022
Zhaiyi Zhang, Dominik Theler, Katarzyna H. Kaminska, Michael Hiller, Pierre de la Grange, Rainer Pudimat, Ilona Rafalska, Bettina Heinrich, Janusz M. Bujnicki, Frédéric H.-T. Allain, Stefan Stamm, The YTH Domain Is a Novel RNA Binding Domain Journal of Biological Chemistry. ,vol. 285, pp. 14701- 14710 ,(2010) , 10.1074/JBC.M110.104711
Xiao Wang, Zhike Lu, Adrian Gomez, Gary C. Hon, Yanan Yue, Dali Han, Ye Fu, Marc Parisien, Qing Dai, Guifang Jia, Bing Ren, Tao Pan, Chuan He, N6-methyladenosine-dependent regulation of messenger RNA stability Nature. ,vol. 505, pp. 117- 120 ,(2014) , 10.1038/NATURE12730
Joseph P. Neglia, Leslie L. Robison, Marilyn Stovall, Yan Liu, Roger J. Packer, Sue Hammond, Yutaka Yasui, Catherine E. Kasper, Ann C. Mertens, Sarah S. Donaldson, Anna T. Meadows, Peter D. Inskip, New Primary Neoplasms of the Central Nervous System in Survivors of Childhood Cancer: a Report From the Childhood Cancer Survivor Study Journal of the National Cancer Institute. ,vol. 98, pp. 1528- 1537 ,(2006) , 10.1093/JNCI/DJJ411
John Lonsdale, Jeffrey Thomas, Mike Salvatore, Rebecca Phillips, Edmund Lo, Saboor Shad, Richard Hasz, Gary Walters, Fernando Garcia, Nancy Young, Barbara Foster, Mike Moser, Ellen Karasik, Bryan Gillard, Kimberley Ramsey, Susan Sullivan, Jason Bridge, Harold Magazine, John Syron, Johnelle Fleming, Laura Siminoff, Heather Traino, Maghboeba Mosavel, Laura Barker, Scott Jewell, Dan Rohrer, Dan Maxim, Dana Filkins, Philip Harbach, Eddie Cortadillo, Bree Berghuis, Lisa Turner, Eric Hudson, Kristin Feenstra, Leslie Sobin, James Robb, Phillip Branton, Greg Korzeniewski, Charles Shive, David Tabor, Liqun Qi, Kevin Groch, Sreenath Nampally, Steve Buia, Angela Zimmerman, Anna Smith, Robin Burges, Karna Robinson, Kim Valentino, Deborah Bradbury, Mark Cosentino, Norma Diaz-Mayoral, Mary Kennedy, Theresa Engel, Penelope Williams, Kenyon Erickson, Kristin Ardlie, Wendy Winckler, Gad Getz, David DeLuca, Daniel MacArthur, Manolis Kellis, Alexander Thomson, Taylor Young, Ellen Gelfand, Molly Donovan, Yan Meng, George Grant, Deborah Mash, Yvonne Marcus, Margaret Basile, Jun Liu, Jun Zhu, Zhidong Tu, Nancy J Cox, Dan L Nicolae, Eric R Gamazon, Hae Kyung Im, Anuar Konkashbaev, Jonathan Pritchard, Matthew Stevens, Timothèe Flutre, Xiaoquan Wen, Emmanouil T Dermitzakis, Tuuli Lappalainen, Roderic Guigo, Jean Monlong, Michael Sammeth, Daphne Koller, Alexis Battle, Sara Mostafavi, Mark McCarthy, Manual Rivas, Julian Maller, Ivan Rusyn, Andrew Nobel, Fred Wright, Andrey Shabalin, Mike Feolo, Nataliya Sharopova, Anne Sturcke, Justin Paschal, James M Anderson, Elizabeth L Wilder, Leslie K Derr, Eric D Green, Jeffery P Struewing, Gary Temple, Simona Volpi, Joy T Boyer, Elizabeth J Thomson, Mark S Guyer, Cathy Ng, Assya Abdallah, Deborah Colantuoni, Thomas R Insel, Susan E Koester, A Roger Little, Patrick K Bender, Thomas Lehner, Yin Yao, Carolyn C Compton, Jimmie B Vaught, Sherilyn Sawyer, Nicole C Lockhart, Joanne Demchok, Helen F Moore, The Genotype-Tissue Expression (GTEx) project Nature Genetics. ,vol. 45, pp. 580- 585 ,(2013) , 10.1038/NG.2653
Melissa L. Bondy, Michael E. Scheurer, Beatrice Malmer, Jill S. Barnholtz-Sloan, Faith G. Davis, Dora Il'yasova, Carol Kruchko, Bridget J. McCarthy, Preetha Rajaraman, Judith A. Schwartzbaum, Siegal Sadetzki, Brigitte Schlehofer, Tarik Tihan, Joseph L. Wiemels, Margaret Wrensch, Patricia A. Buffler, , Brain tumor epidemiology: Consensus from the Brain Tumor Epidemiology Consortium Cancer. ,vol. 113, pp. 1953- 1968 ,(2008) , 10.1002/CNCR.23741
Sanjay Shete, Fay J Hosking, Lindsay B Robertson, Sara E Dobbins, Marc Sanson, Beatrice Malmer, Matthias Simon, Yannick Marie, Blandine Boisselier, Jean-Yves Delattre, Khe Hoang-Xuan, Soufiane El Hallani, Ahmed Idbaih, Diana Zelenika, Ulrika Andersson, Roger Henriksson, A Tommy Bergenheim, Maria Feychting, Stefan Lönn, Anders Ahlbom, Johannes Schramm, Michael Linnebank, Kari Hemminki, Rajiv Kumar, Sarah J Hepworth, Amy Price, Georgina Armstrong, Yanhong Liu, Xiangjun Gu, Robert Yu, Ching Lau, Minouk Schoemaker, Kenneth Muir, Anthony Swerdlow, Mark Lathrop, Melissa Bondy, Richard S Houlston, None, Genome-wide association study identifies five susceptibility loci for glioma Nature Genetics. ,vol. 41, pp. 899- 904 ,(2009) , 10.1038/NG.407
M. Umetani, T. Minami, H. Okayama, S. Takada, M. Yamamoto, H. Aburatani, P. C. Reid, D. E. Housman, T. Hamakubo, T. Kodama, K. Horiuchi, Wilms' tumor 1-associating protein regulates G2/M transition through stabilization of cyclin A2 mRNA. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 103, pp. 17278- 17283 ,(2006) , 10.1073/PNAS.0608357103
Xiao-Li Ping, Bao-Fa Sun, Lu Wang, Wen Xiao, Xin Yang, Wen-Jia Wang, Samir Adhikari, Yue Shi, Ying Lv, Yu-Sheng Chen, Xu Zhao, Ang Li, Ying Yang, Ujwal Dahal, Xiao-Min Lou, Xi Liu, Jun Huang, Wei-Ping Yuan, Xiao-Fan Zhu, Tao Cheng, Yong-Liang Zhao, Xinquan Wang, Jannie M Rendtlew Danielsen, Feng Liu, Yun-Gui Yang, Mammalian WTAP is a regulatory subunit of the RNA N6-methyladenosine methyltransferase Cell Research. ,vol. 24, pp. 177- 189 ,(2014) , 10.1038/CR.2014.3