Identification of the ligand binding sites on the molecular surface of proteins
作者： Kengo Kinoshita , Haruki Nakamura
DOI: 10.1110/PS.041080105
关键词:
摘要: … (All the correct answers in our learning data set are listed in … as supplementary materials, Supplemental Figure S1 and … Each binding site has an ID code with the form of “ligand name,” “…
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Desmond G Higgins, Julie D Thompson, Toby J Gibson, USING CLUSTAL FOR MULTIPLE SEQUENCE ALIGNMENTS Methods in Enzymology. ,vol. 266, pp. 383- 402 ,(1996) , 10.1016/S0076-6879(96)66024-8
Janet M. Thornton, Annabel E. Todd, Duncan Milburn, Neera Borkakoti, Christine A. Orengo, From structure to function: Approaches and limitations Nature Structural & Molecular Biology. ,vol. 7, pp. 991- 994 ,(2000) , 10.1038/80784
William R. Pearson, Using the FASTA Program to Search Protein and DNA Sequence Databases Methods of Molecular Biology. ,vol. 24, pp. 307- 331 ,(1994) , 10.1385/0-89603-246-9:307
Kengo Kinoshita, Jun'ichi Furui, Haruki Nakamura, Identification of protein functions from a molecular surface database, eF-site Journal of Structural and Functional Genomics. ,vol. 2, pp. 9- 22 ,(2002) , 10.1023/A:1011318527094
Kengo Kinoshita, Haruki Nakamura, Identification of protein biochemical functions by similarity search using the molecular surface database eF-site. Protein Science. ,vol. 12, pp. 1589- 1595 ,(2003) , 10.1110/PS.0368703
Gerard J Kleywegt, Recognition of Spatial Motifs in Protein Structures Journal of Molecular Biology. ,vol. 285, pp. 1887- 1897 ,(1999) , 10.1006/JMBI.1998.2393
Andrew C. Wallace, Roman A. Laskowski, Janet M. Thornton, Derivation of 3D coordinate templates for searching structural databases: application to Ser-His-Asp catalytic triads in the serine proteinases and lipases. Protein Science. ,vol. 5, pp. 1001- 1013 ,(1996) , 10.1002/PRO.5560050603
Helen Berman, Kim Henrick, Haruki Nakamura, Announcing the worldwide Protein Data Bank Nature Structural & Molecular Biology. ,vol. 10, pp. 980- 980 ,(2003) , 10.1038/NSB1203-980
Kengo Kinoshita, Keishi Sadanami, Akinori Kidera, Nobuhiro Go, Structural motif of phosphate-binding site common to various protein superfamilies: all-against-all structural comparison of protein-mononucleotide complexes. Protein Engineering. ,vol. 12, pp. 11- 14 ,(1999) , 10.1093/PROTEIN/12.1.11
Annabel E Todd, Christine A Orengo, Janet M Thornton, Evolution of function in protein superfamilies, from a structural perspective. Journal of Molecular Biology. ,vol. 307, pp. 1113- 1143 ,(2001) , 10.1006/JMBI.2001.4513