USING CLUSTAL FOR MULTIPLE SEQUENCE ALIGNMENTS
作者： Desmond G Higgins , Julie D Thompson , Toby J Gibson
DOI: 10.1016/S0076-6879(96)66024-8
关键词: Weighting 、 Alignment-free sequence analysis 、 Test case 、 Bioinformatics 、 Biology 、 Sequence 、 Algorithm 、 Structural alignment 、 Multiple sequence alignment 、 Set (abstract data type) 、 Heuristic
摘要: … If the data set consists of enough closely related sequences so that the first alignments are … It may be useful to build up an alignment of closely related sequences first and to then add in …
elsevier.com
sci-hub.se 参考文章(27)
Geoffrey J. Barton, Michael J.E. Sternberg, A strategy for the rapid multiple alignment of protein sequences. Confidence levels from tertiary structure comparisons. Journal of Molecular Biology. ,vol. 198, pp. 327- 337 ,(1987) , 10.1016/0022-2836(87)90316-0
Russell F. Doolittle, Of urfs and orfs : a primer on how to analyze devised amino acid sequences University Science Books. ,(1986)
Da-Fei Feng, Russell F. Doolittle, Progressive sequence alignment as a prerequisitetto correct phylogenetic trees Journal of Molecular Evolution. ,vol. 25, pp. 351- 360 ,(1987) , 10.1007/BF02603120
Roland Lüthy, Ioannis Xenarios, Philipp Bucher, Improving the sensitivity of the sequence profile method. Protein Science. ,vol. 3, pp. 139- 146 ,(1994) , 10.1002/PRO.5560030118
Steven Henikoff, Jorja G. Henikoff, Position-based sequence weights☆ Journal of Molecular Biology. ,vol. 243, pp. 574- 578 ,(1994) , 10.1016/0022-2836(94)90032-9
David J. Bacon, Wayne F. Anderson, Multiple sequence alignment. Journal of Molecular Biology. ,vol. 191, pp. 153- 161 ,(1986) , 10.1016/0022-2836(86)90252-4
William R. Taylor, A flexible method to align large numbers of biological sequences Journal of Molecular Evolution. ,vol. 28, pp. 161- 169 ,(1988) , 10.1007/BF02143508
Stefano Pascarella, Patrick Argos, Analysis of insertions/deletions in protein structures. Journal of Molecular Biology. ,vol. 224, pp. 461- 471 ,(1992) , 10.1016/0022-2836(92)91008-D
Eric Sobel, Hugo M. Martinez, A multiple sequence alignment program Nucleic Acids Research. ,vol. 14, pp. 363- 374 ,(1986) , 10.1093/NAR/14.1.363
C. Lawrence, S. Altschul, M. Boguski, J. Liu, A. Neuwald, J. Wootton, Detecting Subtle Sequence Signals: A Gibbs Sampling Strategy for Multiple Alignment Science. ,vol. 262, pp. 208- 214 ,(1993) , 10.1126/SCIENCE.8211139