Mapping Histological Slice Sequences to the Allen Mouse Brain Atlas Without 3D Reconstruction.
作者： Jing Xiong , Jing Ren , Liqun Luo , Mark Horowitz
关键词:
摘要: … Here we describe a framework that maps each slice to its corresponding plane in the Allen Mouse Brain Atlas (2015) to build a plane-wise mapping and then perform 2D nonrigid …
frontiersin.org
sci-hub.se 参考文章(38)
Rembrandt Bakker, Paul Tiesinga, Rolf Kötter, The Scalable Brain Atlas: Instant Web-Based Access to Public Brain Atlases and Related Content Neuroinformatics. ,vol. 13, pp. 353- 366 ,(2015) , 10.1007/S12021-014-9258-X
Zhengyi Yang, Kay Richards, Nyoman D. Kurniawan, Steven Petrou, David C. Reutens, MRI-guided volume reconstruction of mouse brain from histological sections Journal of Neuroscience Methods. ,vol. 211, pp. 210- 217 ,(2012) , 10.1016/J.JNEUMETH.2012.08.021
Daniel H. Adler, John Pluta, Salmon Kadivar, Caryne Craige, James C. Gee, Brian B. Avants, Paul A. Yushkevich, Histology-derived volumetric annotation of the human hippocampal subfields in postmortem MRI NeuroImage. ,vol. 84, pp. 505- 523 ,(2014) , 10.1016/J.NEUROIMAGE.2013.08.067
Edmund M. Glaser, Hendrik Van der Loos, Analysis of thick brain sections by obverse—Reverse computer microscopy: Application of a new, high clarity Golgi—Nissl stain Journal of Neuroscience Methods. ,vol. 4, pp. 117- 125 ,(1981) , 10.1016/0165-0270(81)90045-5
Ulas Bagci, Li Bai, Automatic Best Reference Slice Selection for Smooth Volume Reconstruction of a Mouse Brain From Histological Images IEEE Transactions on Medical Imaging. ,vol. 29, pp. 1688- 1696 ,(2010) , 10.1109/TMI.2010.2050594
Paul Tiesinga, Rembrandt Bakker, Sean Hill, Jan G Bjaalie, Feeding the human brain model Current Opinion in Neurobiology. ,vol. 32, pp. 107- 114 ,(2015) , 10.1016/J.CONB.2015.02.003
Amalia Cifor, Li Bai, Alain Pitiot, Smoothness-guided 3-D reconstruction of 2-D histological images. NeuroImage. ,vol. 56, pp. 197- 211 ,(2011) , 10.1016/J.NEUROIMAGE.2011.01.060
Iskra Pollak Dorocic, Daniel Fürth, Yang Xuan, Yvonne Johansson, Laura Pozzi, Gilad Silberberg, Marie Carlén, Konstantinos Meletis, A Whole-Brain Atlas of Inputs to Serotonergic Neurons of the Dorsal and Median Raphe Nuclei Neuron. ,vol. 83, pp. 663- 678 ,(2014) , 10.1016/J.NEURON.2014.07.002
Maged Goubran, Cathie Crukley, Sandrine de Ribaupierre, Terence M. Peters, Ali R. Khan, Image registration of ex-vivo MRI to sparsely sectioned histology of hippocampal and neocortical temporal lobe specimens. NeuroImage. ,vol. 83, pp. 770- 781 ,(2013) , 10.1016/J.NEUROIMAGE.2013.07.053
Julien Dauguet, Thierry Delzescaux, Françoise Condé, Jean-François Mangin, Nicholas Ayache, Philippe Hantraye, Vincent Frouin, Three-dimensional reconstruction of stained histological slices and 3D non-linear registration with in-vivo MRI for whole baboon brain. Journal of Neuroscience Methods. ,vol. 164, pp. 191- 204 ,(2007) , 10.1016/J.JNEUMETH.2007.04.017