Machine Learning Algorithm Helps Identify Non-Diagnosed Prodromal Alzheimer's Disease Patients in the General Population.

作者: Sam Khinda , O. Uspenskaya-Cadoz , C. Rubel , Y. Nigmatullina , N. Kayal

DOI: 10.14283/JPAD.2019.10

关键词:

摘要: Recruiting patients for clinical trials of potential therapies Alzheimer’s disease (AD) remains a major challenge, with demand trial participants at an all-time high. The AD treatment R&D pipeline includes around 112 agents. In the United States alone, 150 are seeking 70,000 participants. Most people early cognitive impairment consult primary care providers, who may lack time, diagnostic skills and awareness local trials. Machine learning predictive analytics offer promise to boost enrollment by predicting which have prodromal AD, will go on develop AD. authors set out machine model that identifies in general population, aid detection physicians timely referral expert sites biomarker confirmation diagnosis enrollment. use classification algorithm extract patterns within healthcare claims prescription data three years prior diagnosis/AD drug initiation. study focused subjects included proprietary IQVIA US assets (claims databases). Patient information was extracted from January 2010 July 2018, cohorts aged between 50 85 years. A total 88,298,289 were identified. For positive cohort, 667,288 identified had 24 months medical history least one record or treatment. negative 3,670,254 selected similar length matched cohort based prevalence rate. scoring availability recent 2–5 72,670,283 ages None. list clinically–relevant interpretable predictors generated sets each subject, including pharmacological treatments (NDC/ product), office/specialist visits (specialty), tests procedures (HCPCS CPT), (ICD). defined as 3 offset estimate diagnosis. Supervised ML techniques used algorithms predict occurrence cases. sample dataset divided randomly into training test dataset. models trained executed PySpark framework. Training evaluation LogisticRegression, DecisionTreeClassifier, RandomForestClassifier, GBTClassifier using PySpark’s mllib module. area under precision-recall curve (AUCPR) compare results various models. AUCPRs 0.426, 0.157, 0.436, 0.440 GBTClassifier, respectively, meaning (Gradient Boosted Tree) outperforms other classifiers. GBT 222,721 stage 80% precision. Some 76% setting. Applying developed U.S. residents, identified, majority whom This could drive advances research enabling more accurate earlier physician level, would facilitate in–depth assessment enrolment

参考文章(13)
Joshua D. Grill, James E. Galvin, Facilitating Alzheimer Disease Research Recruitment Alzheimer Disease & Associated Disorders. ,vol. 28, pp. 1- 8 ,(2014) , 10.1097/WAD.0000000000000016
Jennifer L. Watson, Laurie Ryan, Nina Silverberg, Vicky Cahan, Marie A. Bernard, Obstacles And Opportunities In Alzheimer’s Clinical Trial Recruitment Health Affairs. ,vol. 33, pp. 574- 579 ,(2014) , 10.1377/HLTHAFF.2013.1314
James E. Galvin, Thomas M. Meuser, John C. Morris, Improving physician awareness of Alzheimer disease and enhancing recruitment: the Clinician Partners Program. Alzheimer Disease & Associated Disorders. ,vol. 26, pp. 61- 67 ,(2012) , 10.1097/WAD.0B013E318212C0DF
Elaheh Moradi, Antonietta Pepe, Christian Gaser, Heikki Huttunen, Jussi Tohka, Alzheimer's Disease Neuroimaging Initiative, Machine learning framework for early MRI-based Alzheimer's conversion prediction in MCI subjects. NeuroImage. ,vol. 104, pp. 398- 412 ,(2015) , 10.1016/J.NEUROIMAGE.2014.10.002
Linda Nichols, Jennifer Martindale-Adams, Robert Burns, David Coon, Marcia Ory, Diane Mahoney, Barbara Tarlow, Louis Burgio, Dolores Gallagher-Thompson, Delois Guy, Trinidad Arguelles, Laraine Winter, Social Marketing as a Framework for Recruitment Journal of Aging and Health. ,vol. 16, pp. 157S- 176S ,(2004) , 10.1177/0898264304269727
M. M. Williams, M. M. Meisel, J. Williams, J. C. Morris, An Interdisciplinary Outreach Model of African American Recruitment for Alzheimer’s Disease Research Gerontologist. ,vol. 51, ,(2011) , 10.1093/GERONT/GNQ098
John Morris, Leslie Shaw, Beau Ances, Maria Carroll, Erin Franklin, Mark Mintun, Stacy Schneider, Angela Oliver, Cascaded Multi-view Canonical Correlation (CaMCCo) for Early Diagnosis of Alzheimer's Disease via Fusion of Clinical, Imaging and Omic Features. Scientific Reports. ,vol. 7, pp. 8137- 8137 ,(2017) , 10.1038/S41598-017-03925-0
Agustín Ruiz, Lluís Tárraga, Mercè Boada, Miguel A. Santos-Santos, Octavio Rodríguez-Gómez, Montserrat Alegret, Pilar Cañabate, Asunción Lafuente, Carla Abdelnour, Mar Buendía, Maria José de Dios, América Morera, Ángela Sanabria, Laura Campo, Patient Engagement: The Fundació ACE Framework for Improving Recruitment and Retention in Alzheimer’s Disease Research Journal of Alzheimer's Disease. ,vol. 62, pp. 1079- 1090 ,(2018) , 10.3233/JAD-170866
Michael Gold, Joan Amatniek, Maria C. Carrillo, Jesse M. Cedarbaum, James A. Hendrix, Bradley B. Miller, Julie M. Robillard, J. Jeremy Rice, Holly Soares, Maria B. Tome, Ioannis Tarnanas, Gabriel Vargas, Lisa J. Bain, Sara J. Czaja, Digital technologies as biomarkers, clinical outcomes assessment, and recruitment tools in Alzheimer's disease clinical trials Alzheimer's & Dementia: Translational Research & Clinical Interventions. ,vol. 4, pp. 234- 242 ,(2018) , 10.1016/J.TRCI.2018.04.003
Jin San Lee, Changsoo Kim, Jeong-Hyeon Shin, Hanna Cho, Dae-seock Shin, Nakyoung Kim, Hee Jin Kim, Yeshin Kim, Samuel N Lockhart, Duk L Na, Sang Won Seo, Joon-Kyung Seong, None, Machine Learning-based Individual Assessment of Cortical Atrophy Pattern in Alzheimer's Disease Spectrum: Development of the Classifier and Longitudinal Evaluation Scientific Reports. ,vol. 8, pp. 4161- 4161 ,(2018) , 10.1038/S41598-018-22277-X