4D Genome Rewiring during Oncogene-Induced and Replicative Senescence

作者: Satish Sati , Boyan Bonev , Quentin Szabo , Daniel Jost , Paul Bensadoun

DOI: 10.1016/J.MOLCEL.2020.03.007

关键词:

摘要: To understand the role of the extensive senescence-associated 3D genome reorganization, we generated genome-wide chromatin interaction maps, epigenome, replication-timing …

参考文章(78)
Lorraine Frost, Maria A. M. Baez, Christopher Harrilal, Alyssa Garabedian, Francisco Fernandez-Lima, Fenfei Leng, The Dimerization State of the Mammalian High Mobility Group Protein AT-Hook 2 (HMGA2) PLOS ONE. ,vol. 10, pp. e0130478- ,(2015) , 10.1371/JOURNAL.PONE.0130478
Aaron T.L. Lun, Gordon K. Smyth, diffHic: a Bioconductor package to detect differential genomic interactions in Hi-C data BMC Bioinformatics. ,vol. 16, pp. 258- 258 ,(2015) , 10.1186/S12859-015-0683-0
Thomas Cremer, Marion Cremer, Barbara Hübner, Hilmar Strickfaden, Daniel Smeets, Jens Popken, Michael Sterr, Yolanda Markaki, Karsten Rippe, Christoph Cremer, The 4D nucleome: Evidence for a dynamic nuclear landscape based on co-aligned active and inactive nuclear compartments FEBS Letters. ,vol. 589, pp. 2931- 2943 ,(2015) , 10.1016/J.FEBSLET.2015.05.037
Masashi Narita, Masako Narita, Valery Krizhanovsky, Sabrina Nuñez, Agustin Chicas, Stephen A. Hearn, Michael P. Myers, Scott W. Lowe, A novel role for high-mobility group a proteins in cellular senescence and heterochromatin formation. Cell. ,vol. 126, pp. 503- 514 ,(2006) , 10.1016/J.CELL.2006.05.052
Frédéric Bantignies, Virginie Roure, Itys Comet, Benjamin Leblanc, Bernd Schuettengruber, Jérôme Bonnet, Vanessa Tixier, André Mas, Giacomo Cavalli, Polycomb-dependent Regulatory Contacts Between Distant Hox Loci in Drosophila Cell. ,vol. 144, pp. 214- 226 ,(2011) , 10.1016/J.CELL.2010.12.026
Judith Campisi, Fabrizio d'Adda di Fagagna, Cellular senescence: when bad things happen to good cells Nature Reviews Molecular Cell Biology. ,vol. 8, pp. 729- 740 ,(2007) , 10.1038/NRM2233
Satomi Ito, Adriana Magalska, Manuel Alcaraz-Iborra, Jose P. Lopez-Atalaya, Victor Rovira, Bruno Contreras-Moreira, Michal Lipinski, Roman Olivares, Jose Martinez-Hernandez, Blazej Ruszczycki, Rafael Lujan, Emilio Geijo-Barrientos, Grzegorz M. Wilczynski, Angel Barco, Loss of neuronal 3D chromatin organization causes transcriptional and behavioural deficits related to serotonergic dysfunction Nature Communications. ,vol. 5, pp. 4450- ,(2014) , 10.1038/NCOMMS5450
Suhas SP Rao, Miriam H Huntley, Neva C Durand, Elena K Stamenova, Ivan D Bochkov, James T Robinson, Adrian L Sanborn, Ido Machol, Arina D Omer, Eric S Lander, Erez Lieberman Aiden, None, A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping Cell. ,vol. 159, pp. 1665- 1680 ,(2014) , 10.1016/J.CELL.2014.11.021
Mekayla Storer, Alba Mas, Alexandre Robert-Moreno, Matteo Pecoraro, M. Carmen Ortells, Valeria Di Giacomo, Reut Yosef, Noam Pilpel, Valery Krizhanovsky, James Sharpe, William M. Keyes, Senescence is a developmental mechanism that contributes to embryonic growth and patterning. Cell. ,vol. 155, pp. 1119- 1130 ,(2013) , 10.1016/J.CELL.2013.10.041
Daniele Canzio, Maofu Liao, Nariman Naber, Edward Pate, Adam Larson, Shenping Wu, Diana B. Marina, Jennifer F. Garcia, Hiten D. Madhani, Roger Cooke, Peter Schuck, Yifan Cheng, Geeta J. Narlikar, A conformational switch in HP1 releases auto-inhibition to drive heterochromatin assembly Nature. ,vol. 496, pp. 377- 381 ,(2013) , 10.1038/NATURE12032