A novel DNA sequence similarity calculation based on simplified pulse-coupled neural network and Huffman coding

作者: Xin Jin , Rencan Nie , Dongming Zhou , Shaowen Yao , Yanyan Chen

DOI: 10.1016/J.PHYSA.2016.05.004

关键词:

摘要: A novel method for the calculation of DNA sequence similarity is proposed based on simplified pulse-coupled neural network (S-PCNN) and Huffman coding. In this study, we propose a …

参考文章(46)
Wenbing Hou, Qiuhui Pan, Mingfeng He, A novel representation of DNA sequence based on CMI coding Physica A-statistical Mechanics and Its Applications. ,vol. 409, pp. 87- 96 ,(2014) , 10.1016/J.PHYSA.2014.04.030
Xiaojun Li, Yide Ma, Xiaowen Feng, Self-adaptive autowave pulse-coupled neural network for shortest-path problem Neurocomputing. ,vol. 115, pp. 63- 71 ,(2013) , 10.1016/J.NEUCOM.2012.12.030
M. Monica Subashini, Sarat Kumar Sahoo, Review: Pulse coupled neural networks and its applications Expert Systems With Applications. ,vol. 41, pp. 3965- 3974 ,(2014) , 10.1016/J.ESWA.2013.12.027
Huihui Li, Xing Jin, Ning Yang, Zhe Yang, The recognition of landed aircrafts based on PCNN model and affine moment invariants Pattern Recognition Letters. ,vol. 51, pp. 23- 29 ,(2015) , 10.1016/J.PATREC.2014.07.021
Ping-an He, Dan Li, Yanping Zhang, Xin Wang, Yuhua Yao, A 3D graphical representation of protein sequences based on the Gray code. Journal of Theoretical Biology. ,vol. 304, pp. 81- 87 ,(2012) , 10.1016/J.JTBI.2012.03.023
Yaonan Wang, Ji Ge, Hui Zhang, Bowen Zhou, None, Intelligent injection liquid particle inspection machine based on two-dimensional Tsallis Entropy with modified pulse-coupled neural networks Engineering Applications of Artificial Intelligence. ,vol. 24, pp. 625- 637 ,(2011) , 10.1016/J.ENGAPPAI.2011.02.012
Zhaobin Wang, Yide Ma, Feiyan Cheng, Lizhen Yang, Review article: Review of pulse-coupled neural networks Image and Vision Computing. ,vol. 28, pp. 5- 13 ,(2010) , 10.1016/J.IMAVIS.2009.06.007
Bo Liao, Yusen Zhang, Kequan Ding, Tian-ming Wang, Analysis of similarity/dissimilarity of DNA sequences based on a condensed curve representation Journal of Molecular Structure-theochem. ,vol. 717, pp. 199- 203 ,(2005) , 10.1016/J.THEOCHEM.2004.12.015
Didier G. Arquès, Christian J. Michel, A Complementary Circular Code in the Protein Coding Genes Journal of Theoretical Biology. ,vol. 182, pp. 45- 58 ,(1996) , 10.1006/JTBI.1996.0142
Usman Ahmed Syed, Faraz Kunwar, Mazhar Iqbal, None, Guided Autowave Pulse Coupled Neural Network (GAPCNN) based real time path planning and an obstacle avoidance scheme for mobile robots Robotics and Autonomous Systems. ,vol. 62, pp. 474- 486 ,(2014) , 10.1016/J.ROBOT.2013.12.004