Next-Generation Sequencing for Cancer Biomarker Discovery

作者: Aarti N. Desai , Abhay Jere

DOI: 10.1007/978-3-319-15811-2_7

关键词:

摘要: Cancer is a genetic disorder that arises from gene mutations as well changes in transcriptional and epigenetic profiles. These can serve valuable biomarkers for early detection, staging, detailed molecular characterization of cancer individualized therapy. Mutations several known oncogenes (e.g., EGFR, HER2, KRAS) tumor suppressor genes TP53, PTEN, PI3K) are already being used to guide therapy breast cancer, ovarian lung prostate etc. However, heterogeneity instability genomes poses significant challenge reliable reproducible detection biomarkers. Moreover, multigene comprehensive knowledge the mutational landscape extremely important most effective therapeutic intervention.

参考文章(134)
Chikashi Nakanishi, Tatsuro Yamaguchi, Takeru Iijima, Shigehira Saji, Masakazu Toi, Takeo Mori, Michiko Miyaki, Germline mutation of the LKB1/STK11 gene with loss of the normal allele in an aggressive breast cancer of Peutz-Jeghers syndrome. Oncology. ,vol. 67, pp. 476- 479 ,(2004) , 10.1159/000082933
Hilmi Ozcelik, Xuejiang Shi, Martin C. Chang, Eric Tram, Matt Vlasschaert, Nando Di Nicola, Anna Kiselova, Denise Yee, Aaron Goldman, Mark Dowar, Balram Sukhu, Rita Kandel, Kathy Siminovitch, Long-Range PCR and Next-Generation Sequencing of BRCA1 and BRCA2 in Breast Cancer The Journal of Molecular Diagnostics. ,vol. 14, pp. 467- 475 ,(2012) , 10.1016/J.JMOLDX.2012.03.006
Martin J Larsen, Mads Thomassen, Qihua Tan, Anne-Vibeke Lænkholm, Martin Bak, Kristina P Sørensen, Mette Klarskov Andersen, Torben A Kruse, Anne-Marie Gerdes, RNA profiling reveals familial aggregation of molecular subtypes in non-BRCA1/2 breast cancer families BMC Medical Genomics. ,vol. 7, pp. 9- 9 ,(2014) , 10.1186/1755-8794-7-9
Sonata Jarmalaite, Feliksas Jankevicius, Kristina Kurgonaite, Kestutis Suziedelis, Pertti Mutanen, Kirsti Husgafvel-Pursiainen, Promoter Hypermethylation in Tumour Suppressor Genes Shows Association with Stage, Grade and Invasiveness of Bladder Cancer Oncology. ,vol. 75, pp. 145- 151 ,(2008) , 10.1159/000158665
Sohrab P Shah, Andrew Roth, Rodrigo Goya, Arusha Oloumi, Gavin Ha, Yongjun Zhao, Gulisa Turashvili, Jiarui Ding, Kane Tse, Gholamreza Haffari, Ali Bashashati, Leah M Prentice, Jaswinder Khattra, Angela Burleigh, Damian Yap, Virginie Bernard, Andrew McPherson, Karey Shumansky, Anamaria Crisan, Ryan Giuliany, Alireza Heravi-Moussavi, Jamie Rosner, Daniel Lai, Inanc Birol, Richard Varhol, Angela Tam, Noreen Dhalla, Thomas Zeng, Kevin Ma, Simon K Chan, Malachi Griffith, Annie Moradian, S-W Grace Cheng, Gregg B Morin, Peter Watson, Karen Gelmon, Stephen Chia, Suet-Feung Chin, Christina Curtis, Oscar M Rueda, Paul D Pharoah, Sambasivarao Damaraju, John Mackey, Kelly Hoon, Timothy Harkins, Vasisht Tadigotla, Mahvash Sigaroudinia, Philippe Gascard, Thea Tlsty, Joseph F Costello, Irmtraud M Meyer, Connie J Eaves, Wyeth W Wasserman, Steven Jones, David Huntsman, Martin Hirst, Carlos Caldas, Marco A Marra, Samuel Aparicio, None, The clonal and mutational evolution spectrum of primary triple-negative breast cancers Nature. ,vol. 486, pp. 395- 399 ,(2012) , 10.1038/NATURE10933
E Martínez, K Yoshihara, H Kim, G M Mills, V Treviño, R G W Verhaak, Comparison of gene expression patterns across 12 tumor types identifies a cancer supercluster characterized by TP53 mutations and cell cycle defects. Oncogene. ,vol. 34, pp. 2732- 2740 ,(2015) , 10.1038/ONC.2014.216
Akihiro Fujimoto, Yasushi Totoki, Tetsuo Abe, Keith A Boroevich, Fumie Hosoda, Ha Hai Nguyen, Masayuki Aoki, Naoya Hosono, Michiaki Kubo, Fuyuki Miya, Yasuhito Arai, Hiroyuki Takahashi, Takuya Shirakihara, Masao Nagasaki, Tetsuo Shibuya, Kaoru Nakano, Kumiko Watanabe-Makino, Hiroko Tanaka, Hiromi Nakamura, Jun Kusuda, Hidenori Ojima, Kazuaki Shimada, Takuji Okusaka, Masaki Ueno, Yoshinobu Shigekawa, Yoshiiku Kawakami, Koji Arihiro, Hideki Ohdan, Kunihito Gotoh, Osamu Ishikawa, Shun-ichi Ariizumi, Masakazu Yamamoto, Terumasa Yamada, Kazuaki Chayama, Tomoo Kosuge, Hiroki Yamaue, Naoyuki Kamatani, Satoru Miyano, Hitoshi Nakagama, Yusuke Nakamura, Tatsuhiko Tsunoda, Tatsuhiro Shibata, Hidewaki Nakagawa, None, Whole-genome sequencing of liver cancers identifies etiological influences on mutation patterns and recurrent mutations in chromatin regulators Nature Genetics. ,vol. 44, pp. 760- 764 ,(2012) , 10.1038/NG.2291
Massimo Cristofanilli, Savitri Krishnamurthy, Laura Guerra, Kristine Broglio, Banu Arun, Daniel J. Booser, Kerstin Menander, Jill Van Wart Hood, Vicente Valero, Gabriel N. Hortobagyi, A nonreplicating adenoviral vector that contains the wild-typep53 transgene combined with chemotherapy for primary breast cancer Cancer. ,vol. 107, pp. 935- 944 ,(2006) , 10.1002/CNCR.22080