Role of conservative mutations in protein multi-property adaptation.

作者: David Rodriguez-Larrea , Raul Perez-Jimenez , Inmaculada Sanchez-Romero , Asuncion Delgado-Delgado , Julio M. Fernandez

DOI: 10.1042/BJ20100386

关键词:

摘要: Protein physicochemical properties must undergo complex changes during evolution, as a response to modifications in the organism environment, result of proteins taking up new roles or because need cope with evolution molecular interacting partners. Recent work has emphasized role stability and stability–function trade-offs these protein adaptation processes. In present study, on other hand, we report that combinations few conservative, high-frequency-of-fixation mutations thioredoxin molecule lead largely independent both diversity catalytic mechanisms, revealed by single-molecule atomic force spectroscopy. Furthermore, found are evolutionarily significant, they combine typically hyperthermophilic enhancements modulations function span ranges defined quite different patterns thioredoxins from bacterial eukaryotic origin. These results suggest evolutionary may use, some cases at least, potential conservative originate multiplicity allowed mutational paths leading variety modulation patterns. addition support feasibility using information achieve multi-feature optimization, an important biotechnological goal.

参考文章(32)
Daniel M. Weinreich, Richard A. Watson, Lin Chao, SIGN EPISTASIS AND GENETIC CONSTRAINT ON EVOLUTIONARY TRAJECTORIES ,(2005)
in chief George M. Garrity, Bergey's Manual of Systematic Bacteriology ,(1986)
Andreas P.M. Weber, Robin J. Horst, Guillaume G. Barbier, Christine Oesterhelt, Metabolism and metabolomics of eukaryotes living under extreme conditions. International Review of Cytology-a Survey of Cell Biology. ,vol. 256, pp. 1- 34 ,(2007) , 10.1016/S0074-7696(07)56001-8
Xiaojun Wang, George Minasov, Brian K. Shoichet, Evolution of an antibiotic resistance enzyme constrained by stability and activity trade-offs. Journal of Molecular Biology. ,vol. 320, pp. 85- 95 ,(2002) , 10.1016/S0022-2836(02)00400-X
Raquel Godoy-Ruiz, Fernando Ariza, David Rodriguez-Larrea, Raul Perez-Jimenez, Beatriz Ibarra-Molero, Jose M. Sanchez-Ruiz, Natural Selection for Kinetic Stability Is a Likely Origin of Correlations between Mutational Effects on Protein Energetics and Frequencies of Amino Acid Occurrences in Sequence Alignments Journal of Molecular Biology. ,vol. 362, pp. 966- 978 ,(2006) , 10.1016/J.JMB.2006.07.065
Raul Perez-Jimenez, Arun P. Wiita, David Rodriguez-Larrea, Pallav Kosuri, Jose A. Gavira, Jose M. Sanchez-Ruiz, Julio M. Fernandez, Force-clamp spectroscopy detects residue co-evolution in enzyme catalysis Journal of Biological Chemistry. ,vol. 283, pp. 27121- 27129 ,(2008) , 10.1074/JBC.M803746200
Steven A Benner, M Daniel Caraco, J Michael Thomson, Eric A Gaucher, Planetary Biology—Paleontological, Geological, and Molecular Histories of Life Science. ,vol. 296, pp. 864- 868 ,(2002) , 10.1126/SCIENCE.1069863
Susan L. Strausberg, Biao Ruan, Kathryn E. Fisher, Patrick A. Alexander, Philip N. Bryan, Directed coevolution of stability and catalytic activity in calcium-free subtilisin. Biochemistry. ,vol. 44, pp. 3272- 3279 ,(2005) , 10.1021/BI047806M