CPGAVAS2, an integrated plastome sequence annotator and analyzer
作者： Linchun Shi , Haimei Chen , Mei Jiang , Liqiang Wang , Xi Wu
DOI: 10.1093/NAR/GKZ345
关键词:
摘要: … GeSeq supports the use of both internal and external references. Although these tools have been … in plastome research has presented new challenges and demands for such tools. …
oup.com
sci-hub.se 参考文章(37)
M. Morgante, A. Pfeiffer, A. Costacurta, A. M. Olivieri, W. Powell, G. G. Vendramin, J. A. Rafalski, Polymorphic Simple Sequence Repeats in Nuclear and Chloroplast Genomes: Applications to the Population Genetics of Trees Springer, Dordrecht. pp. 233- 238 ,(1996) , 10.1007/978-94-011-3983-0_32
Michael S. Campbell, Carson Holt, Barry Moore, Mark Yandell, Genome Annotation and Curation Using MAKER and MAKER-P Current protocols in human genetics. ,vol. 48, ,(2014) , 10.1002/0471250953.BI0411S48
H. Schroeder, A. M. Hoeltken, M. Fladung, Differentiation of Populus species using chloroplast single nucleotide polymorphism (SNP) markers--essential for comprehensible and reliable poplar breeding. Plant Biology. ,vol. 14, pp. 374- 381 ,(2012) , 10.1111/J.1438-8677.2011.00502.X
N. Scarcelli, C. Mariac, T. L. P. Couvreur, A. Faye, D. Richard, F. Sabot, C. Berthouly‐Salazar, Y. Vigouroux, Intra-individual polymorphism in chloroplasts from NGS data: where does it come from and how to handle it? Molecular Ecology Resources. ,vol. 16, pp. 434- 445 ,(2016) , 10.1111/1755-0998.12462
Frank Jühling, Mario Mörl, Roland K Hartmann, Mathias Sprinzl, Peter F Stadler, Joern Pütz, tRNAdb 2009: compilation of tRNA sequences and tRNA genes Nucleic Acids Research. ,vol. 37, pp. 159- 162 ,(2009) , 10.1093/NAR/GKN772
Dean Laslett, Bjorn Canback, ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences Nucleic Acids Research. ,vol. 32, pp. 11- 16 ,(2004) , 10.1093/NAR/GKH152
Hannes Ruwe, Benoit Castandet, Christian Schmitz-Linneweber, David B. Stern, Arabidopsis chloroplast quantitative editotype. FEBS Letters. ,vol. 587, pp. 1429- 1433 ,(2013) , 10.1016/J.FEBSLET.2013.03.022
D. C. Shields, K. H. Wolfe, Accelerated evolution of sites undergoing mRNA editing in plant mitochondria and chloroplasts. Molecular Biology and Evolution. ,vol. 14, pp. 344- 349 ,(1997) , 10.1093/OXFORDJOURNALS.MOLBEV.A025768
Marc Lohse, Oliver Drechsel, Sabine Kahlau, Ralph Bock, OrganellarGenomeDRAW—a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets Nucleic Acids Research. ,vol. 41, pp. 575- 581 ,(2013) , 10.1093/NAR/GKT289
Cole Trapnell, Adam Roberts, Loyal Goff, Geo Pertea, Daehwan Kim, David R Kelley, Harold Pimentel, Steven L Salzberg, John L Rinn, Lior Pachter, Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks Nature Protocols. ,vol. 7, pp. 562- 578 ,(2012) , 10.1038/NPROT.2012.016