DNA, diseases and databases: disastrously deficient

作者: G PATRINOS , A BROOKES

DOI: 10.1016/J.TIG.2005.04.004

关键词:

摘要: Recent progress in disease genetics and genome-related medicine has been substantial, with vast amounts of data being generated. However, this not matched by adequate database projects that gather organize these to enable their useful exploitation. This research area is complex, entailing core databases, locus-specific national mutation genotype–phenotype databases patient – much work required develop properly integrate various resources. To promote this, we present a timely overview the field, emphasize its over-riding importance discuss disastrously deficient made so far. Many factors contribute slow (e.g. technological hurdles, publication requirements, short-sighted popularist system). A lack targeted funding arguably most fundamental problem, but one can be solved.

参考文章(43)
TIH Project, None, The International HapMap Project Nature. ,vol. 426, pp. 789- 796 ,(2003) , 10.1038/NATURE02168
Ahmad S. Teebi, Saeed A. Teebi, Christopher J. Porter, A. Jamie Cuticchia, Arab genetic disease database (AGDDB): a population-specific clinical and mutation database. Human Mutation. ,vol. 19, pp. 615- 621 ,(2002) , 10.1002/HUMU.10082
Ross C. Hardison, David H.K. Chui, Belinda Giardine, Cathy Riemer, George P. Patrinos, Nicholas Anagnou, Webb Miller, Henri Wajcman, HbVar: A relational database of human hemoglobin variants and thalassemia mutations at the globin gene server. Human Mutation. ,vol. 19, pp. 225- 233 ,(2002) , 10.1002/HUMU.10044
E. S. Lander, The New Genomics: Global Views of Biology Science. ,vol. 274, pp. 536- 539 ,(1996) , 10.1126/SCIENCE.274.5287.536
George P. Patrinos, Panagoula Kollia, Elisavet Papapanagiotou, Aphrodite Loutradi-Anagnostou, Dimitris Loukopoulos, Manoussos N. Papadakis, Aγ‐haplotypes: A new group of genetic markers for thalassemic mutations inside the 5′ regulatory region of the human Aγ‐globin gene American Journal of Hematology. ,vol. 66, pp. 99- 104 ,(2001) , 10.1002/1096-8652(200102)66:2<99::AID-AJH1024>3.0.CO;2-9
C. R. Scriver, After the genome--the phenome? Journal of Inherited Metabolic Disease. ,vol. 27, pp. 305- 317 ,(2004) , 10.1023/B:BOLI.0000031100.26546.6E
R Gerlai, Phenomics: fiction or the future? Trends in Neurosciences. ,vol. 25, pp. 506- 509 ,(2002) , 10.1016/S0166-2236(02)02250-6
Kati Sipilä, Pertti Aula, Database for the mutations of the Finnish disease heritage. Human Mutation. ,vol. 19, pp. 16- 22 ,(2002) , 10.1002/HUMU.10019
Judith G. Hall, A clinician's plea. Nature Genetics. ,vol. 33, pp. 440- 442 ,(2003) , 10.1038/NG0403-440
M. Pirastu, R. Galanello, M. A. Doherty, T. Tuveri, A. Cao, Y. W. Kan, The same beta-globin gene mutation is present on nine different beta-thalassemia chromosomes in a Sardinian population. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 84, pp. 2882- 2885 ,(1987) , 10.1073/PNAS.84.9.2882