A high-throughput gene expression analysis technique using competitive PCR and matrix-assisted laser desorption ionization time-of-flight MS.

作者: C. Ding , C. R. Cantor

DOI: 10.1073/PNAS.0630494100

关键词:

摘要: We report here an approach for gene expression analysis by combining competitive PCR and matrix-assisted laser desorption ionization time-of-flight MS. A DNA standard is designed with artificial single nucleotide polymorphism in the of interest. The added to reverse transcription product before PCR. Subsequently, a base extension reaction carried out at position, products are quantified capable relative absolute quantification expression; it extremely sensitive (as few as five copies were quantified) highly reproducible. It also simultaneous both alleles heterozygotes alternatively spliced genes. have incorporated this technique homogeneous Mass Extension system (Sequenom) create high-throughput, automated platform where hundred genes from 20–500 different samples can be accurately per day.

参考文章(22)
Willard M. Freeman, Stephen J. Walker, Kent E. Vrana, Quantitative RT-PCR: pitfalls and potential. BioTechniques. ,vol. 26, pp. 112- 125 ,(1999) , 10.2144/99261RV01
Hai Yan, Weishi Yuan, Victor E Velculescu, Bert Vogelstein, Kenneth W Kinzler, Allelic Variation in Human Gene Expression Science. ,vol. 297, pp. 1143- 1143 ,(2002) , 10.1126/SCIENCE.1072545
M. Bittner, P. Meltzer, Y. Chen, Y. Jiang, E. Seftor, M. Hendrix, M. Radmacher, R. Simon, Z. Yakhini, A. Ben-Dor, N. Sampas, E. Dougherty, E. Wang, F. Marincola, C. Gooden, J. Lueders, A. Glatfelter, P. Pollock, J. Carpten, E. Gillanders, D. Leja, K. Dietrich, C. Beaudry, M. Berens, D. Alberts, V. Sondak, N. Hayward, J. Trent, Molecular classification of cutaneous malignant melanoma by gene expression profiling Nature. ,vol. 406, pp. 536- 540 ,(2000) , 10.1038/35020115
T Hilton Grayson, Lynne F Cooper, Annette B Wrathmell, Janet Roper, Andrew J Evenden, Martyn L Gilpin, Host responses to Renibacterium salmoninarum and specific components of the pathogen reveal the mechanisms of immune suppression and activation Immunology. ,vol. 106, pp. 273- 283 ,(2002) , 10.1046/J.1365-2567.2002.01420.X
V. E. Velculescu, L. Zhang, B. Vogelstein, K. W. Kinzler, Serial analysis of gene expression Science. ,vol. 270, pp. 484- 487 ,(2000) , 10.1126/SCIENCE.270.5235.484
T. R. Golub, D. K. Slonim, P. Tamayo, C. Huard, M. Gaasenbeek, J. P. Mesirov, H. Coller, M. L. Loh, J. R. Downing, M. A. Caligiuri, C. D. Bloomfield, E. S. Lander, Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science. ,vol. 286, pp. 531- 537 ,(1999) , 10.1126/SCIENCE.286.5439.531
J Craig Venter, Mark D Adams, Eugene W Myers, Peter W Li, Richard J Mural, Granger G Sutton, Hamilton O Smith, Mark Yandell, Cheryl A Evans, Robert A Holt, Jeannine D Gocayne, Peter Amanatides, Richard M Ballew, Daniel H Huson, Jennifer Russo Wortman, Qing Zhang, Chinnappa D Kodira, Xiangqun H Zheng, Lin Chen, Marian Skupski, Gangadharan Subramanian, Paul D Thomas, Jinghui Zhang, George L Gabor Miklos, Catherine Nelson, Samuel Broder, Andrew G Clark, Joe Nadeau, Victor A McKusick, Norton Zinder, Arnold J Levine, Richard J Roberts, Mel Simon, Carolyn Slayman, Michael Hunkapiller, Randall Bolanos, Arthur Delcher, Ian Dew, Daniel Fasulo, Michael Flanigan, Liliana Florea, Aaron Halpern, Sridhar Hannenhalli, Saul Kravitz, Samuel Levy, Clark Mobarry, Knut Reinert, Karin Remington, Jane Abu-Threideh, Ellen Beasley, Kendra Biddick, Vivien Bonazzi, Rhonda Brandon, Michele Cargill, Ishwar Chandramouliswaran, Rosane Charlab, Kabir Chaturvedi, Zuoming Deng, Valentina Di Francesco, Patrick Dunn, Karen Eilbeck, Carlos Evangelista, Andrei E Gabrielian, Weiniu Gan, Wangmao Ge, Fangcheng Gong, Zhiping Gu, Ping Guan, Thomas J Heiman, Maureen E Higgins, Rui-Ru Ji, Zhaoxi Ke, Karen A Ketchum, Zhongwu Lai, Yiding Lei, Zhenya Li, Jiayin Li, Yong Liang, Xiaoying Lin, Fu Lu, Gennady V Merkulov, Natalia Milshina, Helen M Moore, Ashwinikumar K Naik, Vaibhav A Narayan, Beena Neelam, Deborah Nusskern, Douglas B Rusch, Steven Salzberg, Wei Shao, Bixiong Shue, Jingtao Sun, Zhen Yuan Wang, Aihui Wang, Xin Wang, Jian Wang, Ming-Hui Wei, Ron Wides, Chunlin Xiao, Chunhua Yan, Alison Yao, Jane Ye, Ming Zhan, Weiqing Zhang, Hongyu Zhang, Qi Zhao, Liansheng Zheng, Fei Zhong, Wenyan Zhong, Shiaoping C Zhu, Shaying Zhao, Dennis Gilbert, Suzanna Baumhueter, Gene Spier, Christine Carter, Anibal Cravchik, Trevor Woodage, Feroze Ali, Huijin An, Aderonke Awe, Danita Baldwin, Holly Baden, Mary Barnstead, Ian Barrow, Karen Beeson, Dana Busam, Amy Carver, Angela Center, Ming Lai Cheng, Liz Curry, Steve Danaher, Lionel Davenport, Raymond Desilets, Susanne Dietz, Kristina Dodson, Lisa Doup, Steven Ferriera, Neha Garg, Andres Gluecksmann, Brit Hart, Jason Haynes, Charles Haynes, Cheryl Heiner, Suzanne Hladun, Damon Hostin, Jarrett Houck, Timothy Howland, Chinyere Ibegwam, Jeffery Johnson, Francis Kalush, The Sequence of the Human Genome Science. ,vol. 291, pp. 1304- 1351 ,(2001) , 10.1126/SCIENCE.1058040
David J. Lockhart, Helin Dong, Michael C. Byrne, Maximillian T. Follettie, Michael V. Gallo, Mark S. Chee, Michael Mittmann, Chunwei Wang, Michiko Kobayashi, Heidi Norton, Eugene L. Brown, Expression monitoring by hybridization to high density oligonucleotide arrays Nature Biotechnology. ,vol. 14, pp. 1675- 1680 ,(1996) , 10.1038/NBT1296-1675