Striking differences in patterns of germline mutation between mice and humans

作者: Sarah J. Lindsay , Raheleh Rahbari , Joanna Kaplanis , Thomas Keane , Matthew E. Hurles

DOI: 10.1101/082297

关键词:

摘要: Little is known about differences in germline mutation processes between extant mammals. We analysed genome sequences of mouse and human pedigrees to investigate mutational these species. found that while the generational rate mice 40% humans, annual 16 times higher, per cell division two-fold higher. classified mutations into four temporal strata reflecting timing within lineage from zygote gamete. The earliest embryonic divisions are most mutagenic both species, but account for a much higher proportion all (~25%) than humans (~5%). observed strong sex bias number arising subsequent early embryo mice, not humans. Finally, we reconstructed partial genealogies murine parental gametes suggest markedly unequal contributions founding primordial germ cells.

参考文章(41)
K. A. Lawson, W. J. Hage, Clonal analysis of the origin of primordial germ cells in the mouse. Ciba Foundation symposium. ,vol. 182, pp. 68- 91 ,(2007) , 10.1002/9780470514573.CH5
Yuri Kimura, Melissa T. R. Hawkins, Molly M. McDonough, Louis L. Jacobs, Lawrence J. Flynn, Corrected placement of Mus-Rattus fossil calibration forces precision in the molecular tree of rodents. Scientific Reports. ,vol. 5, pp. 14444- 14444 ,(2015) , 10.1038/SREP14444
Ivan Bedzhov, Sarah J. L. Graham, Chuen Yan Leung, Magdalena Zernicka-Goetz, Developmental plasticity, cell fate specification and morphogenesis in the early mouse embryo Philosophical Transactions of the Royal Society B: Biological Sciences. ,vol. 369, pp. 20130538- ,(2014) , 10.1098/RSTB.2013.0538
Yves Clément, Peter F. Arndt, Substitution Patterns Are Under Different Influences in Primates and Rodents Genome Biology and Evolution. ,vol. 3, pp. 236- 245 ,(2011) , 10.1093/GBE/EVR011
L. B. Russell, W. L. Russell, Spontaneous mutations recovered as mosaics in the mouse specific-locus test Proceedings of the National Academy of Sciences of the United States of America. ,vol. 93, pp. 13072- 13077 ,(1996) , 10.1073/PNAS.93.23.13072
Aylwyn Scally, Richard Durbin, Revising the human mutation rate: implications for understanding human evolution Nature Reviews Genetics. ,vol. 13, pp. 745- 753 ,(2012) , 10.1038/NRG3295
K. Wang, M. Li, H. Hakonarson, ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data Nucleic Acids Research. ,vol. 38, ,(2010) , 10.1093/NAR/GKQ603
Adeolu B. Adewoye, Sarah J. Lindsay, Yuri E. Dubrova, Matthew E. Hurles, The genome-wide effects of ionizing radiation on mutation induction in the mammalian germline Nature Communications. ,vol. 6, pp. 6684- 6684 ,(2015) , 10.1038/NCOMMS7684