Active microelectronic chip devices which utilize controlled electrophoretic fields for multiplex DNA hybridization and other genomic applications

作者: Michael J. Heller , Anita H. Forster , Eugene Tu

DOI: 10.1002/(SICI)1522-2683(20000101)21:1<157::AID-ELPS157>3.0.CO;2-E

关键词:

摘要: Microelectronic DNA chip devices that contain planar arrays of microelectrodes have been developed for multiplex hybridization and a variety genomic research diagnostic applications. These are able to produce almost any desired electric field configuration on their surface. This ability well-defined fields allows charged molecules (DNA, RNA, proteins, enzymes, antibodies, nanobeads, even micron scale semiconductor devices) be electrophoretically transported or from microlocation the surface device. Of key importance device function is permeation layer which overcoats microelectrodes. The generally porous hydrogel material water small ions (Na+, CI-, etc.) freely contact microelectrode surface, but impedes transport larger analytes (oligonucleotides, DNA, etc.). prevents destruction at active ameliorates adverse effects electrolysis products sensitive reactions, serves as support structure attaching probes other array. In order maintain rapid molecules, facilitate hybridization, work within constrained current voltage ranges, low conductance buffers various electronic pulsing scenarios also developed. microelectronic array allow electrophoretic used carry out accelerated reactions improve selectivity single nucleotide polymorphism (SNP), short tandem repeat (STR), point mutation analysis.

参考文章(13)
Carl F Edman, Daniel E Raymond, David J Wu, Eugene Tu, Ronald G Sosnowski, William F Butler, Michael Nerenberg, Michael J Heller, Electric Field Directed Nucleic Acid Hybridization on Microchips Nucleic Acids Research. ,vol. 25, pp. 4907- 4914 ,(1997) , 10.1093/NAR/25.24.4907
Jagannath B. Lamture, Kenneth LBeattie, Barry E. Burke, Mitchell D. Eggers, Dan J. Ehrlich, Rick Fowler, Mark A. Hollis, Bernard B. Kosicki, Robert K. Reich, Sean R. Smith, Rajender S. Varma, Michael E. Hogan, Direct detection of nucleic acid hybridization on the surface of a charge coupled device Nucleic Acids Research. ,vol. 22, pp. 2121- 2125 ,(1994) , 10.1093/NAR/22.11.2121
William Bains, Geoff C. Smith, A novel method for nucleic acid sequence determination Journal of Theoretical Biology. ,vol. 135, pp. 303- 307 ,(1988) , 10.1016/S0022-5193(88)80246-7
M.J. Heller, An active microelectronics device for multiplex DNA analysis IEEE Engineering in Medicine and Biology Magazine. ,vol. 15, pp. 100- 104 ,(1996) , 10.1109/51.486725
Stephen P. A. Fodor, Richard P. Rava, Xiaohua C. Huang, Ann C. Pease, Christopher P. Holmes, Cynthia L. Adams, Multiplexed biochemical assays with biological chips Nature. ,vol. 364, pp. 555- 556 ,(1993) , 10.1038/364555A0
M. Chee, R. Yang, E. Hubbell, A. Berno, X. C. Huang, D. Stern, J. Winkler, D. J. Lockhart, M. S. Morris, S. P. A. Fodor, Accessing Genetic Information with High-Density DNA Arrays Science. ,vol. 274, pp. 610- 614 ,(1996) , 10.1126/SCIENCE.274.5287.610
R. G. Sosnowski, E. Tu, W. F. Butler, J. P. O'Connell, M. J. Heller, Rapid determination of single base mismatch mutations in DNA hybrids by direct electric field control Proceedings of the National Academy of Sciences of the United States of America. ,vol. 94, pp. 1119- 1123 ,(1997) , 10.1073/PNAS.94.4.1119
Jing Cheng, Edward L. Sheldon, Lei Wu, Adam Uribe, Louis O. Gerrue, John Carrino, Michael J. Heller, James P. O'Connell, Preparation and hybridization analysis of DNA/RNA from E. coli on microfabricated bioelectronic chips Nature Biotechnology. ,vol. 16, pp. 541- 546 ,(1998) , 10.1038/NBT0698-541
Patrick N. Gilles, David J. Wu, Charles B. Foster, Patrick J. Dillon, Stephen J. Chanock, Single nucleotide polymorphic discrimination by electronic dot blot assay on semiconductor microchips Nature Biotechnology. ,vol. 17, pp. 365- 370 ,(2000) , 10.1038/7921