A novel network model identified a 13-gene lung cancer prognostic signature

作者: Nancy Lan Guo , Ying-Wooi Wan , Swetha Bose , James Denvir , Michael L Kashon

DOI: 10.1504/IJCBDD.2011.038655

关键词:

摘要: This study presents a novel network methodology to identify prognostic gene signatures. Implication networks based on prediction logic are used construct genome-wide coexpression for different disease states. From the differential components associated with specific states, candidate genes that co-expressed major signal hallmarks selected. these genes, top most predictive of clinical outcome identified using univariate Cox model and Relief algorithm. Using this approach, 13-gene lung cancer prognosis signature was identified, which generated significant stratifications (log-rank P < 0.05) in Director's Challenge Study (n = 442).

参考文章(36)
Tsuguo Naruke, Tomoyuki Goya, Ryosuke Tsuchiya, Keiichi Suemasu, Prognosis and survival in resected lung carcinoma based on the new international staging system. The Journal of Thoracic and Cardiovascular Surgery. ,vol. 96, pp. 440- 447 ,(1988) , 10.1016/S0022-5223(19)35243-2
Mark A. Hall, Ian H. Witten, Eibe Frank, Data Mining: Practical Machine Learning Tools and Techniques ,(1999)
Leland H. Hartwell, John J. Hopfield, Stanislas Leibler, Andrew W. Murray, From molecular to modular cell biology. Nature. ,vol. 402, ,(1999) , 10.1038/35011540
Michel C. Desmarais, Ameen Maluf, Jiming Liu, User-expertise modeling with empirically derived probabilistic implication networks User Modeling and User-adapted Interaction. ,vol. 5, pp. 283- 315 ,(1996) , 10.1007/BF01126113
Ron Milo, Shalev Itzkovitz, Nadav Kashtan, Reuven Levitt, Shai Shen-Orr, Inbal Ayzenshtat, Michal Sheffer, Uri Alon, Superfamilies of evolved and designed networks. Science. ,vol. 303, pp. 1538- 1542 ,(2004) , 10.1126/SCIENCE.1089167
Michel C. Desmarais, Peyman Meshkinfam, Michel Gagnon, Learned student models with item to item knowledge structures User Modeling and User-adapted Interaction. ,vol. 16, pp. 403- 434 ,(2006) , 10.1007/S11257-006-9016-3
Ying-Wooi Wan, Ebrahim Sabbagh, Rebecca Raese, Yong Qian, Dajie Luo, James Denvir, Val Vallyathan, Vincent Castranova, Nancy Lan Guo, Hybrid Models Identified a 12-Gene Signature for Lung Cancer Prognosis and Chemoresponse Prediction PLoS ONE. ,vol. 5, pp. e12222- ,(2010) , 10.1371/JOURNAL.PONE.0012222
Jiming Liu, Michel C Desmarais, None, A method of learning implication networks from empirical data: algorithm and Monte-Carlo simulation-based validation IEEE Transactions on Knowledge and Data Engineering. ,vol. 9, pp. 990- 1004 ,(1997) , 10.1109/69.649321
Birol Emir, Sam Wieand, John Q. Su, Steve Cha, Analysis of repeated markers used to predict progression of cancer Statistics in Medicine. ,vol. 17, pp. 2563- 2578 ,(1998) , 10.1002/(SICI)1097-0258(19981130)17:22<2563::AID-SIM952>3.0.CO;2-O
Christos Sotiriou, Martine J. Piccart, Taking gene-expression profiling to the clinic: when will molecular signatures become relevant to patient care? Nature Reviews Cancer. ,vol. 7, pp. 545- 553 ,(2007) , 10.1038/NRC2173