Sensitive Detection and Conjoint Analysis of Promoter Methylation by Conjugated Polymers for Differential Diagnosis and Prognosis of Glioma.

作者: Lixin Ma , Yiming Huang , Hongwei Zhang , Weihai Ning , Ruilian Qi

DOI: 10.1021/ACSAMI.0C03218

关键词:

摘要: Glioma is the most common primary tumor in central nervous system (CNS) with worst prognosis. Accurate pathological diagnosis has always been a challenge for optimal management of glioma. Promoter methylation an important mechanism epigenetic silencing tumor-suppressor genes and potential biomarker differential Herein, using cationic conjugated polymer (CCP)-based fluorescence resonance energy transfer (FRET) technique, we realized highly sensitive detection promoter clinical samples minimal degree (1.25%) trace DNA quantity (10 ng/μL). Results three glioma-related (MGMT, CDKN2A, TERT) were combined diagnostic classifier to analyze glioma-CpG island methylator phenotype (G-CIMP), which achieved sensitivity 80% at maximum specificity 100% glioma diagnosis. Kaplan-Meier survival curves Pearson correlation analysis revealed that prognosis patients high G-CIMP scores (>5) was significantly better than those low scores, especially diffuse midline astrocytoma. This CCP-based FRET technique determining status could provide rapid reasonably accurate glioma, as well valuable prognostic prediction can guide individual treatment.

参考文章(29)
Tarik Tihan, Mitchell S. Berger, Susan M. Chang, Michael D. Prados, Joseph Wiemels, John K. Wiencke, Margaret R. Wrensch, Robert B. Jenkins, Jeanette E. Eckel-Passow, Daniel H. Lachance, Annette M. Molinaro, Kyle M. Walsh, Paul A. Decker, Hugues Sicotte, Melike Pekmezci, Terri Rice, Matt L. Kosel, Ivan V. Smirnov, Gobinda Sarkar, Alissa A. Caron, Thomas M. Kollmeyer, Corinne E. Praska, Anisha R. Chada, Chandralekha Halder, Helen M. Hansen, Lucie S. McCoy, Paige M. Bracci, Roxanne Marshall, Shichun Zheng, Gerald F. Reis, Alexander R. Pico, Brian P. O’Neill, Jan C. Buckner, Caterina Giannini, Jason T. Huse, Arie Perry, Glioma Groups Based on 1p/19q, IDH, and TERT Promoter Mutations in Tumors The New England Journal of Medicine. ,vol. 372, pp. 2499- 2508 ,(2015) , 10.1056/NEJMOA1407279
Deborah S. Malley, Rifat A. Hamoudi, Sylvia Kocialkowski, Danita M. Pearson, Vincent Peter Collins, Koichi Ichimura, A distinct region of the MGMT CpG island critical for transcriptional regulation is preferentially methylated in glioblastoma cells and xenografts Acta Neuropathologica. ,vol. 121, pp. 651- 661 ,(2011) , 10.1007/S00401-011-0803-5
Hoang-A. Ho, Ahmed Najari, Mario Leclerc, Optical Detection of DNA and Proteins with Cationic Polythiophenes Accounts of Chemical Research. ,vol. 41, pp. 168- 178 ,(2008) , 10.1021/AR700115T
Sevin Turcan, Daniel Rohle, Anuj Goenka, Logan A. Walsh, Fang Fang, Emrullah Yilmaz, Carl Campos, Armida W. M. Fabius, Chao Lu, Patrick S. Ward, Craig B. Thompson, Andrew Kaufman, Olga Guryanova, Ross Levine, Adriana Heguy, Agnes Viale, Luc G. T. Morris, Jason T. Huse, Ingo K. Mellinghoff, Timothy A. Chan, IDH1 mutation is sufficient to establish the glioma hypermethylator phenotype Nature. ,vol. 483, pp. 479- 483 ,(2012) , 10.1038/NATURE10866
Fude Feng, Libing Liu, Shu Wang, Fluorescent conjugated polymer-based FRET technique for detection of DNA methylation of cancer cells. Nature Protocols. ,vol. 5, pp. 1255- 1264 ,(2010) , 10.1038/NPROT.2010.79
Qiong Yang, Ying Dong, Wei Wu, Chunlei Zhu, Hui Chong, Jiangyang Lu, Dehai Yu, Libing Liu, Fengting Lv, Shu Wang, Detection and differential diagnosis of colon cancer by a cumulative analysis of promoter methylation Nature Communications. ,vol. 3, pp. 1206- ,(2012) , 10.1038/NCOMMS2209
Wolfgang Wick, Michael Weller, Martin van den Bent, Marc Sanson, Markus Weiler, Andreas von Deimling, Christoph Plass, Monika Hegi, Michael Platten, Guido Reifenberger, MGMT testing—the challenges for biomarker-based glioma treatment Nature Reviews Neurology. ,vol. 10, pp. 372- 385 ,(2014) , 10.1038/NRNEUROL.2014.100
Hannes M Müller, Michael Oberwalder, Heidi Fiegl, Maria Morandell, Georg Goebel, Matthias Zitt, Markus Mühlthaler, Dietmar Öfner, Raimund Margreiter, Martin Widschwendter, Methylation changes in faecal DNA: a marker for colorectal cancer screening? The Lancet. ,vol. 363, pp. 1283- 1285 ,(2004) , 10.1016/S0140-6736(04)16002-9
Romulo M Brena, Herbert Auer, Karl Kornacker, Christoph Plass, Quantification of DNA methylation in electrofluidics chips (Bio-COBRA) Nature Protocols. ,vol. 1, pp. 52- 58 ,(2006) , 10.1038/NPROT.2006.8
Tetsuji Nakagawachi, Hidenobu Soejima, Takeshi Urano, Wei Zhao, Ken Higashimoto, Yuji Satoh, Shiroh Matsukura, Shinichi Kudo, Yoshihiko Kitajima, Haruhito Harada, Koichi Furukawa, Hideki Matsuzaki, Mitsuru Emi, Yusaku Nakabeppu, Kohji Miyazaki, Mutsuo Sekiguchi, Tsunehiro Mukai, Silencing effect of CpG island hypermethylation and histone modifications on O6-methylguanine-DNA methyltransferase (MGMT) gene expression in human cancer Oncogene. ,vol. 22, pp. 8835- 8844 ,(2003) , 10.1038/SJ.ONC.1207183