DNA methylation is required to maintain DNA replication timing precision and 3D genome integrity
作者： Qian Du , Grady C Smith , Phuc Loi Luu , James M Ferguson , Nicola J Armstrong
DOI: 10.1101/2020.10.15.338855
关键词:
摘要: … loss of 3D genome … genome organisation after DNA demethylation. Together, our results highlight a previously underappreciated role for DNA methylation in maintenance of 3D genome …
sci-hub.st 参考文章(105)
Kenneth Eyring, Ivana V. Yang, Brent S. Pedersen, David A. Schwartz, Subhajyoti De, Fast and accurate alignment of long bisulfite-seq reads arXiv: Genomics. ,(2014)
P Jelinic, P Shaw, Loss of imprinting and cancer. The Journal of Pathology. ,vol. 211, pp. 261- 268 ,(2007) , 10.1002/PATH.2116
Fides D Lay, Yaping Liu, Theresa K Kelly, Heather Witt, Peggy J Farnham, Peter A Jones, Benjamin P Berman, None, The role of DNA methylation in directing the functional organization of the cancer epigenome Genome Research. ,vol. 25, pp. 467- 477 ,(2015) , 10.1101/GR.183368.114
N. Takagi, M. Oshimura, Fluorescence and giemsa banding studies of the allocyclic x chromosome in embryonic and adult mouse cells. Experimental Cell Research. ,vol. 78, pp. 127- 135 ,(1973) , 10.1016/0014-4827(73)90046-3
Hui Shen, Peter W. Laird, Interplay Between the Cancer Genome and Epigenome Cell. ,vol. 153, pp. 38- 55 ,(2013) , 10.1016/J.CELL.2013.03.008
Jesus Espada, Esteban Ballestar, Mario F. Fraga, Ana Villar-Garea, Angeles Juarranz, Juan C. Stockert, Keith D. Robertson, François Fuks, Manel Esteller, Human DNA methyltransferase 1 is required for maintenance of the histone H3 modification pattern. Journal of Biological Chemistry. ,vol. 279, pp. 37175- 37184 ,(2004) , 10.1074/JBC.M404842200
Benjamin P Berman, Daniel J Weisenberger, Joseph F Aman, Toshinori Hinoue, Zachary Ramjan, Yaping Liu, Houtan Noushmehr, Christopher P E Lange, Cornelis M van Dijk, Rob A E M Tollenaar, David Van Den Berg, Peter W Laird, Regions of focal DNA hypermethylation and long-range hypomethylation in colorectal cancer coincide with nuclear lamina–associated domains Nature Genetics. ,vol. 44, pp. 40- 46 ,(2012) , 10.1038/NG.969
Bo Li, Colin N Dewey, RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome BMC Bioinformatics. ,vol. 12, pp. 323- 323 ,(2011) , 10.1186/1471-2105-12-323
Joana Sequeira-Mendes, Ramón Díaz-Uriarte, Anwyn Apedaile, Derek Huntley, Neil Brockdorff, María Gómez, None, Transcription Initiation Activity Sets Replication Origin Efficiency in Mammalian Cells PLoS Genetics. ,vol. 5, pp. e1000446- ,(2009) , 10.1371/JOURNAL.PGEN.1000446
Keith D. Robertson, DNA METHYLATION AND HUMAN DISEASE Nature Reviews Genetics. ,vol. 6, pp. 597- 610 ,(2005) , 10.1038/NRG1655