Rumen microbiota for wild boreal cervids living in the same habitat
作者： Kjartan Østbye , Robert Wilson , Knut Rudi
关键词:
摘要: Knowledge about the factors shaping rumen microbiota in wild animals is limited. Therefore, aim of this study was to compare from three cervid species moose ( Alces alces , n = 5), red deer Cervus elaphus 4) and roe Capreolus capreolus 12), sharing same habitat. Using deep 16S rRNA gene sequencing, we found that largest had highest number unique Operational Taxonomic Units (OTUs). Furthermore, moose, shared more microbiota, compared with smallest species, deer, Firmicutes Euryarchaeota being significantly overrepresented for microbiota. These differences could not be explained by diet or range. The largely range, there are no systematic diet. We therefore believe physiology can one main contributing observed distribution species.
oup.com
sci-hub.se 参考文章(19)
Zhipeng Li, André-Denis G. Wright, Hanlu Liu, Zhongyuan Fan, Fuhe Yang, Zhigang Zhang, Guangyu Li, Response of the Rumen Microbiota of Sika Deer (Cervus nippon) Fed Different Concentrations of Tannin Rich Plants PLOS ONE. ,vol. 10, pp. e0123481- ,(2015) , 10.1371/JOURNAL.PONE.0123481
M. Hess, A. Sczyrba, R. Egan, T.-W. Kim, H. Chokhawala, G. Schroth, S. Luo, D. S. Clark, F. Chen, T. Zhang, R. I. Mackie, L. A. Pennacchio, S. G. Tringe, A. Visel, T. Woyke, Z. Wang, E. M. Rubin, Metagenomic discovery of biomass-degrading genes and genomes from cow rumen. Science. ,vol. 331, pp. 463- 467 ,(2011) , 10.1126/SCIENCE.1200387
Robert J. Gruninger, Christoph W. Sensen, Timothy A. McAllister, Robert J. Forster, Diversity of Rumen Bacteria in Canadian Cervids PLoS ONE. ,vol. 9, pp. e89682- ,(2014) , 10.1371/JOURNAL.PONE.0089682
Abdessamad El Kaoutari, Fabrice Armougom, Jeffrey I. Gordon, Didier Raoult, Bernard Henrissat, The abundance and variety of carbohydrate-active enzymes in the human gut microbiota. Nature Reviews Microbiology. ,vol. 11, pp. 497- 504 ,(2013) , 10.1038/NRMICRO3050
Atle Mysterud, Diet overlap among ruminants in Fennoscandia Oecologia. ,vol. 124, pp. 130- 137 ,(2000) , 10.1007/S004420050032
Zhipeng Li, Zhigang Zhang, Chao Xu, Jingbo Zhao, Hanlu Liu, Zhongyuan Fan, Fuhe Yang, André-Denis G. Wright, Guangyu Li, Bacteria and methanogens differ along the gastrointestinal tract of Chinese roe deer (Capreolus pygargus). PLOS ONE. ,vol. 9, ,(2014) , 10.1371/JOURNAL.PONE.0114513
Suzanne L Ishaq, André-Denis G Wright, Insight into the bacterial gut microbiome of the North American moose (Alces alces). BMC Microbiology. ,vol. 12, pp. 212- 212 ,(2012) , 10.1186/1471-2180-12-212
J Gregory Caporaso, Justin Kuczynski, Jesse Stombaugh, Kyle Bittinger, Frederic D Bushman, Elizabeth K Costello, Noah Fierer, Antonio Gonzalez Peña, Julia K Goodrich, Jeffrey I Gordon, Gavin A Huttley, Scott T Kelley, Dan Knights, Jeremy E Koenig, Ruth E Ley, Catherine A Lozupone, Daniel McDonald, Brian D Muegge, Meg Pirrung, Jens Reeder, Joel R Sevinsky, Peter J Turnbaugh, William A Walters, Jeremy Widmann, Tanya Yatsunenko, Jesse Zaneveld, Rob Knight, QIIME allows analysis of high-throughput community sequencing data Nature Methods. ,vol. 7, pp. 335- 336 ,(2010) , 10.1038/NMETH.F.303
Monika Sekelja, Ingunn Berget, Tormod Næs, Knut Rudi, Unveiling an abundant core microbiota in the human adult colon by a phylogroup-independent searching approach. The ISME Journal. ,vol. 5, pp. 519- 531 ,(2011) , 10.1038/ISMEJ.2010.129
Ekaterina Avershina, Ola Storrø, Torbjørn Øien, Roar Johnsen, Phil Pope, Knut Rudi, Major faecal microbiota shifts in composition and diversity with age in a geographically restricted cohort of mothers and their children FEMS Microbiology Ecology. ,vol. 87, pp. 280- 290 ,(2014) , 10.1111/1574-6941.12223