Network Modeling of Lateral Inheritance in Genome and Language Evolution

作者: Shijulal Nelson-Sathi

DOI:

关键词:

摘要: Recent advances in genomics and linguistics have generated vast data that provide a useful benchmark to study micro- macro- evolutionary processes. Several process such as recombination, hybridization, genome fusions lateral gene transfer/horizontal transfer (LGT or HGT) evolution are fundamentally non-treelike nature. Analogies for all major processes also recognized language evolution. Consequently, networks, addition bifurcating trees, become an essential tool modeling conflicting signals complexity genomic linguistic research. Studying using phylogenetic networks traces both vertical well component during their Because similar shaped into contemporary forms, it is possible use methods developed evolution. In the course of this thesis frequency impact transfers genomes (Haloarchaea) languages (Indo-European Polynesian) were investigated. Phylogenomic reconstructed nodes relationships edges. The ten halorarchaeal phylogenomic network approach with respect 1,143 eubacterial reference identified extensive inter domain LGT haloarchaeal results exemplify role transforming strictly anaerobic, chemolithoautotropic methanogen heterotrophic, oxygen-respiring bacteriorhodopsin-photosythetic organism. second third studies presented here, history 84 Indo-European 33 Polynesian examined. cases higher lexical borrowings than previously thought. Modeling opens up new insights provides more precise quantitative inferences about components

参考文章(51)
Thorsten Allers, Moshe Mevarech, Archaeal genetics — the third way Nature Reviews Genetics. ,vol. 6, pp. 58- 73 ,(2005) , 10.1038/NRG1504
Karen E. Nelson, Rebecca A. Clayton, Steven R. Gill, Michelle L. Gwinn, Robert J. Dodson, Daniel H. Haft, Erin K. Hickey, Jeremy D. Peterson, William C. Nelson, Karen A. Ketchum, Lisa McDonald, Teresa R. Utterback, Joel A. Malek, Katja D. Linher, Mina M. Garrett, Ashley M. Stewart, Matthew D. Cotton, Matthew S. Pratt, Cheryl A. Phillips, Delwood Richardson, John Heidelberg, Granger G. Sutton, Robert D. Fleischmann, Jonathan A. Eisen, Owen White, Steven L. Salzberg, Hamilton O. Smith, J. Craig Venter, Claire M. Fraser, Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima Nature. ,vol. 399, pp. 323- 329 ,(1999) , 10.1038/20601
R. G. Beiko, T. J. Harlow, M. A. Ragan, Highways of gene sharing in prokaryotes Proceedings of the National Academy of Sciences of the United States of America. ,vol. 102, pp. 14332- 14337 ,(2005) , 10.1073/PNAS.0504068102
Csaba Pál, Balázs Papp, Martin J Lercher, Adaptive evolution of bacterial metabolic networks by horizontal gene transfer Nature Genetics. ,vol. 37, pp. 1372- 1375 ,(2005) , 10.1038/NG1686
S. Nelson-Sathi, T. Dagan, G. Landan, A. Janssen, M. Steel, J. O. McInerney, U. Deppenmeier, W. F. Martin, Acquisition of 1,000 eubacterial genes physiologically transformed a methanogen at the origin of Haloarchaea Proceedings of the National Academy of Sciences of the United States of America. ,vol. 109, pp. 20537- 20542 ,(2012) , 10.1073/PNAS.1209119109
Mahé Ben Hamed, Feng Wang, Stuck in the forest: Trees, networks and Chinese dialects Diachronica. ,vol. 23, pp. 29- 60 ,(2006) , 10.1075/DIA.23.1.04HAM
I. Chen, The Ins and Outs of DNA Transfer in Bacteria Science. ,vol. 310, pp. 1456- 1460 ,(2005) , 10.1126/SCIENCE.1114021
W. Martin, Gene transfer from organelles to the nucleus: Frequent and in big chunks Proceedings of the National Academy of Sciences. ,vol. 100, pp. 8612- 8614 ,(2003) , 10.1073/PNAS.1633606100