SMCHD1 Merges Chromosome Compartments and Assists Formation of Super-Structures on the Inactive X.

作者: Chen-Yu Wang , Teddy Jégu , Hsueh-Ping Chu , Hyun Jung Oh , Jeannie T. Lee

DOI: 10.1016/J.CELL.2018.05.007

关键词:

摘要: Summary Mammalian chromosomes are partitioned into A/B compartments and topologically associated domains (TADs). The inactive X (Xi) chromosome, however, adopts a distinct conformation without evident or TADs. Here, through exploration of an architectural protein, structural-maintenance-of-chromosomes hinge domain containing 1 (SMCHD1), we probe how the Xi is reconfigured during X chromosome inactivation. first fused "S1" "S2" compartments, coinciding with Xist spreading gene-rich domains. SMCHD1 then binds S1/S2 merges them to create compartment-less architecture. Contrary current views, TADs remain on the Xi but in attenuated state. Ablating results persistent organization and strengthening Furthermore, loss causes regional defects erosion heterochromatic silencing. We present stepwise model for folding, where attenuates a hidden layer architecture facilitate spreading.

参考文章(79)
Kelan Chen, Jiang Hu, Darcy L Moore, Ruijie Liu, Sarah A Kessans, Kelsey Breslin, Isabelle S Lucet, Andrew Keniry, Huei San Leong, Clare L Parish, Douglas J Hilton, Richard JLF Lemmers, Silvère M Van Der Maarel, Peter E Czabotar, Renwick CJ Dobson, Matthew E Ritchie, Graham F Kay, James M Murphy, Marnie E Blewitt, None, Genome-wide binding and mechanistic analyses of Smchd1-mediated epigenetic regulation Proceedings of the National Academy of Sciences. ,vol. 112, pp. E3535- E3544 ,(2015) , 10.1073/PNAS.1504232112
Andrew J. Wood, Wendy A. Bickmore, A TAD Closer to Understanding Dosage Compensation. Developmental Cell. ,vol. 33, pp. 498- 499 ,(2015) , 10.1016/J.DEVCEL.2015.05.021
A. Minajigi, J. E. Froberg, C. Wei, H. Sunwoo, B. Kesner, D. Colognori, D. Lessing, B. Payer, M. Boukhali, W. Haas, J. T. Lee, A comprehensive Xist interactome reveals cohesin repulsion and an RNA-directed chromosome conformation Science. ,vol. 349, ,(2015) , 10.1126/SCIENCE.AAB2276
Xinxian Deng, Wenxiu Ma, Vijay Ramani, Andrew Hill, Fan Yang, Ferhat Ay, Joel B. Berletch, Carl Anthony Blau, Jay Shendure, Zhijun Duan, William S. Noble, Christine M. Disteche, Bipartite structure of the inactive mouse X chromosome. Genome Biology. ,vol. 16, pp. 152- 152 ,(2015) , 10.1186/S13059-015-0728-8
Adrian L Sanborn, Suhas SP Rao, Su-Chen Huang, Neva C Durand, Miriam H Huntley, Andrew I Jewett, Ivan D Bochkov, Dharmaraj Chinnappan, Ashok Cutkosky, Jian Li, Kristopher P Geeting, Andreas Gnirke, Alexandre Melnikov, Doug McKenna, Elena K Stamenova, Eric S Lander, Erez Lieberman Aiden, None, Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 112, pp. 201518552- ,(2015) , 10.1073/PNAS.1518552112
Matthew D. Simon, Stefan F. Pinter, Rui Fang, Kavitha Sarma, Michael Rutenberg-Schoenberg, Sarah K. Bowman, Barry A. Kesner, Verena K. Maier, Robert E. Kingston, Jeannie T. Lee, High-resolution Xist binding maps reveal two-step spreading during X-chromosome inactivation Nature. ,vol. 504, pp. 465- 469 ,(2013) , 10.1038/NATURE12719
Suhas SP Rao, Miriam H Huntley, Neva C Durand, Elena K Stamenova, Ivan D Bochkov, James T Robinson, Adrian L Sanborn, Ido Machol, Arina D Omer, Eric S Lander, Erez Lieberman Aiden, None, A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping Cell. ,vol. 159, pp. 1665- 1680 ,(2014) , 10.1016/J.CELL.2014.11.021
Andrew J. Wood, Aaron F. Severson, Barbara J. Meyer, Condensin and cohesin complexity: the expanding repertoire of functions Nature Reviews Genetics. ,vol. 11, pp. 391- 404 ,(2010) , 10.1038/NRG2794
F Ann Ran, Patrick D Hsu, Jason Wright, Vineeta Agarwala, David A Scott, Feng Zhang, Genome engineering using the CRISPR-Cas9 system Nature Protocols. ,vol. 8, pp. 2281- 2308 ,(2013) , 10.1038/NPROT.2013.143
J. Zhao, B. K. Sun, J. A. Erwin, J.-J. Song, J. T. Lee, Polycomb Proteins Targeted by a Short Repeat RNA to the Mouse X Chromosome Science. ,vol. 322, pp. 750- 756 ,(2008) , 10.1126/SCIENCE.1163045