Complete Genome Sequence of Serratia marcescens SmUNAM836, a Nonpigmented Multidrug-Resistant Strain Isolated from a Mexican Patient with Obstructive Pulmonary Disease

作者: Luisa Sandner-Miranda , Pablo Vinuesa , Gloria Soberón-Chávez , Rosario Morales-Espinosa

DOI: 10.1128/GENOMEA.01417-15

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摘要: Serratia marcescens SmUNAM836 is a multidrug-resistant clinical strain isolated in Mexico City from patient with chronic obstructive pulmonary disease. Its complete genome sequence was determined using PacBio RS II SMRT technology, consisting of 5.2-Mb chromosome and 26.3-kb plasmid, encoding multiple resistance determinants virulence factors.

参考文章(11)
Todd J. Treangen, Dan D. Sommer, Florent E. Angly, Sergey Koren, Mihai Pop, Next generation sequence assembly with AMOS. Current protocols in human genetics. ,vol. 33, pp. 1- 18 ,(2011) , 10.1002/0471250953.BI1108S33
Bhavjinder K Dhillon, Matthew R Laird, Julie A Shay, Geoffrey L Winsor, Raymond Lo, Fazmin Nizam, Sheldon K Pereira, Nicholas Waglechner, Andrew G McArthur, Morgan GI Langille, Fiona SL Brinkman, None, IslandViewer 3: more flexible, interactive genomic island discovery, visualization and analysis Nucleic Acids Research. ,vol. 43, ,(2015) , 10.1093/NAR/GKV401
Chen-Shan Chin, David H Alexander, Patrick Marks, Aaron A Klammer, James Drake, Cheryl Heiner, Alicia Clum, Alex Copeland, John Huddleston, Evan E Eichler, Stephen W Turner, Jonas Korlach, Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data Nature Methods. ,vol. 10, pp. 563- 569 ,(2013) , 10.1038/NMETH.2474
T. Seemann, Prokka: Rapid Prokaryotic Genome Annotation Bioinformatics. ,vol. 30, pp. 2068- 2069 ,(2014) , 10.1093/BIOINFORMATICS/BTU153
Andrew G McArthur, Nicholas Waglechner, Fazmin Nizam, Austin Yan, Marisa A Azad, Alison J Baylay, Kirandeep Bhullar, Marc J Canova, Gianfranco De Pascale, Linda Ejim, Lindsay Kalan, Andrew M King, Kalinka Koteva, Mariya Morar, Michael R Mulvey, Jonathan S O'Brien, Andrew C Pawlowski, Laura JV Piddock, Peter Spanogiannopoulos, Arlene D Sutherland, Irene Tang, Patricia L Taylor, Maulik Thaker, Wenliang Wang, Marie Yan, Tennison Yu, Gerard D Wright, None, The Comprehensive Antibiotic Resistance Database Antimicrobial Agents and Chemotherapy. ,vol. 57, pp. 3348- 3357 ,(2013) , 10.1128/AAC.00419-13
Y. Zhou, Y. Liang, K. H. Lynch, J. J. Dennis, D. S. Wishart, PHAST: A Fast Phage Search Tool Nucleic Acids Research. ,vol. 39, pp. 347- 352 ,(2011) , 10.1093/NAR/GKR485
Ken Shimuta, Makoto Ohnishi, Sunao Iyoda, Naomasa Gotoh, Nobuo Koizumi, Haruo Watanabe, The hemolytic and cytolytic activities of Serratia marcescens phospholipase A (PhlA) depend on lysophospholipid production by PhlA BMC Microbiology. ,vol. 9, pp. 261- 261 ,(2009) , 10.1186/1471-2180-9-261
E. Zankari, H. Hasman, S. Cosentino, M. Vestergaard, S. Rasmussen, O. Lund, F. M. Aarestrup, M. V. Larsen, Identification of acquired antimicrobial resistance genes Journal of Antimicrobial Chemotherapy. ,vol. 67, pp. 2640- 2644 ,(2012) , 10.1093/JAC/DKS261
Atsushi Iguchi, Yutaka Nagaya, Elizabeth Pradel, Tadasuke Ooka, Yoshitoshi Ogura, Keisuke Katsura, Ken Kurokawa, Kenshiro Oshima, Masahira Hattori, Julian Parkhill, Mohamed Sebaihia, Sarah J. Coulthurst, Naomasa Gotoh, Nicholas R. Thomson, Jonathan J. Ewbank, Tetsuya Hayashi, Genome Evolution and Plasticity of Serratia marcescens, an Important Multidrug-Resistant Nosocomial Pathogen Genome Biology and Evolution. ,vol. 6, pp. 2096- 2110 ,(2014) , 10.1093/GBE/EVU160