An analysis of the periodicity of conserved residues in sequence alignments of G-protein coupled receptors

作者: D. Donnelly , M.S. Johnson , T.L. Blundell , J. Saunders

DOI: 10.1016/0014-5793(89)81438-3

关键词:

摘要: Twenty-three sequences from the family of G-protein coupled receptors have been aligned according to 'historical alignment' procedure Feng and Doolittle. Fourier transform analysis this reveals that parts five seven putative membrane-spanning regions exhibit a periodicity conserved/nonconserved residues which is compatible with alpha-helix. This would place conserved on one side helix, may face inside proposed membered helical bundle.

参考文章(53)
J B C Findlay, D J C Pappin, The opsin family of proteins. Biochemical Journal. ,vol. 238, pp. 625- 642 ,(1986) , 10.1042/BJ2380625
P L Barclay, J B C Findlay, Labelling of the cytoplasmic domains of ovine rhodopsin with hydrophilic chemical probes Biochemical Journal. ,vol. 220, pp. 75- 84 ,(1984) , 10.1042/BJ2200075
M D Davison, J B C Findlay, Identification of the sites in opsin modified by photoactivated azido[125I]iodobenzene. Biochemical Journal. ,vol. 236, pp. 389- 395 ,(1986) , 10.1042/BJ2360389
R. A. Dixon, I. S. Sigal, M. R. Candelore, R. B. Register, W. Scattergood, E. Rands, C. D. Strader, Structural features required for ligand binding to the beta-adrenergic receptor. The EMBO Journal. ,vol. 6, pp. 3269- 3275 ,(1987) , 10.1002/J.1460-2075.1987.TB02645.X
E. G. Peralta, A. Ashkenazi, J. W. Winslow, D. H. Smith, J. Ramachandran, D. J. Capon, Distinct primary structures, ligand-binding properties and tissue-specific expression of four human muscarinic acetylcholine receptors. The EMBO Journal. ,vol. 6, pp. 3923- 3929 ,(1987) , 10.1002/J.1460-2075.1987.TB02733.X
D J C Pappin, J B C Findlay, Sequence variability in the retinal-attachment domain of mammalian rhodopsins. Biochemical Journal. ,vol. 217, pp. 605- 613 ,(1984) , 10.1042/BJ2170605
D. B. Pritchett, A. W. Bach, M. Wozny, O. Taleb, R. Dal Toso, J. C. Shih, P. H. Seeburg, Structure and functional expression of cloned rat serotonin 5HT-2 receptor. The EMBO Journal. ,vol. 7, pp. 4135- 4140 ,(1988) , 10.1002/J.1460-2075.1988.TB03308.X
B. K. Kobilka, R. A. Dixon, T. Frielle, H. G. Dohlman, M. A. Bolanowski, I. S. Sigal, T. L. Yang-Feng, U. Francke, M. G. Caron, R. J. Lefkowitz, cDNA for the human beta 2-adrenergic receptor: a protein with multiple membrane-spanning domains and encoded by a gene whose chromosomal location is shared with that of the receptor for platelet-derived growth factor. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 84, pp. 46- 50 ,(1987) , 10.1073/PNAS.84.1.46
Anthony R. Kerlavage, Claire M. Fraser, J. Craig Venter, Muscarinic cholinergic receptor structure: molecular biological support for subtypes Trends in Pharmacological Sciences. ,vol. 8, pp. 426- 431 ,(1987) , 10.1016/0165-6147(87)90230-6