Modulation of TET2 expression and 5-methylcytosine oxidation by the CXXC domain protein IDAX

作者: Myunggon Ko , Jungeun An , Hozefa S. Bandukwala , Lukas Chavez , Tarmo Äijö

DOI: 10.1038/NATURE12052

关键词:

摘要: The CXXC domains of TET2 (encoded by the distinct gene IDAX) and TET3 are found to have previously unknown roles in regulation TET proteins through activation caspases subsequent reduction catalytic activity; this is dependent on DNA binding domain. family modify methylation status oxidizing 5-methylcytosine 5-hydroxymethylcytosine (5hmC, sometimes called 'fifth base' DNA) other intermediates. TET1 contain a domain but ancestral encoded gene, IDAX (or CXXC4). This paper demonstrates that binds unmethylated CpG-rich via its recruits TET2. separate linked shown act as regulators caspase enzymatic activity. authors suggest future studies should focus genomic targets TET2, IDAX-related protein CXXC5 normal development cancer. (ten-eleven-translocation) Fe(ii)- α-ketoglutarate-dependent dioxygenases1,2,3 successively 5-hydroxymethylcytosine, 5-formylcytosine 5-carboxycytosine1,3,4,5, potential intermediates active erasure DNA-methylation marks5,6. Here we show (also known CXXC4), reported inhibitor Wnt signalling7 has been implicated malignant renal cell carcinoma8 colonic villous adenoma9, regulates expression. was originally within an underwent chromosomal inversion during evolution, thus separating from sequences containing CpG dinucleotides, localizes promoters islands interacts directly with Unexpectedly, expression results downregulation, manner depends domain, suggesting before degradation. depletion prevents downregulation differentiating mouse embryonic stem cells, short hairpin RNA against increases human monocytic line U937. Notably, find activity also regulated Taken together, these establish TET3, respectively,

参考文章(40)
Michael C. Haffner, Alcides Chaux, Alan K. Meeker, David M. Esopi, Jonathan Gerber, Laxmi G. Pellakuru, Antoun Toubaji, Pedram Argani, Christine Iacobuzio-Donahue, William G. Nelson, George J. Netto, Angelo M. De Marzo, Srinivasan Yegnasubramanian, Global 5-hydroxymethylcytosine content is significantly reduced in tissue stem/progenitor cell compartments and in human cancers Oncotarget. ,vol. 2, pp. 627- 637 ,(2011) , 10.18632/ONCOTARGET.316
Lakshminarayan M. Iyer, Saraswathi Abhiman, L. Aravind, Natural history of eukaryotic DNA methylation systems. Progress in Molecular Biology and Translational Science. ,vol. 101, pp. 25- 104 ,(2011) , 10.1016/B978-0-12-387685-0.00002-0
H Yang, Y Liu, F Bai, JY Zhang, SH Ma, J Liu, ZD Xu, HG Zhu, ZQ Ling, D Ye, KL Guan, Y Xiong, None, Tumor development is associated with decrease of TET gene expression and 5-methylcytosine hydroxylation Oncogene. ,vol. 32, pp. 663- 669 ,(2013) , 10.1038/ONC.2012.67
Yufei Xu, Chao Xu, Akiko Kato, Wolfram Tempel, Jose Garcia Abreu, Chuanbing Bian, Yeguang Hu, Di Hu, Bin Zhao, Tanja Cerovina, Jianbo Diao, Feizhen Wu, Housheng Hansen He, Qingyan Cui, Erin Clark, Chun Ma, Andrew Barbara, Gert Jan C. Veenstra, Guoliang Xu, Ursula B. Kaiser, X. Shirley Liu, Stephen P. Sugrue, Xi He, Jinrong Min, Yoichi Kato, Yujiang Geno Shi, Tet3 CXXC Domain and Dioxygenase Activity Cooperatively Regulate Key Genes for Xenopus Eye and Neural Development Cell. ,vol. 151, pp. 1200- 1213 ,(2012) , 10.1016/J.CELL.2012.11.014
J. Song, O. Rechkoblit, T. H. Bestor, D. J. Patel, Structure of DNMT1-DNA Complex Reveals a Role for Autoinhibition in Maintenance DNA Methylation Science. ,vol. 331, pp. 1036- 1040 ,(2011) , 10.1126/SCIENCE.1195380
Myoung Shin Kim, Seung Kew Yoon, Frank Bollig, Jirouta Kitagaki, Wonhee Hur, Nathan J. Whye, Yun-Ping Wu, Miguel N. Rivera, Jik Young Park, Ho-Shik Kim, Karim Malik, Daphne W. Bell, Christoph Englert, Alan O. Perantoni, Sean Bong Lee, A novel Wilms tumor 1 (WT1) target gene negatively regulates the WNT signaling pathway. Journal of Biological Chemistry. ,vol. 285, pp. 14585- 14593 ,(2010) , 10.1074/JBC.M109.094334
T Kojima, T Shimazui, S Hinotsu, A Joraku, T Oikawa, K Kawai, R Horie, H Suzuki, R Nagashima, K Yoshikawa, T Michiue, M Asashima, H Akaza, K Uchida, Decreased expression of CXXC4 promotes a malignant phenotype in renal cell carcinoma by activating Wnt signaling Oncogene. ,vol. 28, pp. 297- 305 ,(2009) , 10.1038/ONC.2008.391
Tomasz Cierpicki, Laurie E Risner, Jolanta Grembecka, Stephen M Lukasik, Relja Popovic, Monika Omonkowska, David D Shultis, Nancy J Zeleznik-Le, John H Bushweller, None, Structure of the MLL CXXC domain-DNA complex and its functional role in MLL-AF9 leukemia Nature Structural & Molecular Biology. ,vol. 17, pp. 62- 68 ,(2010) , 10.1038/NSMB.1714
Shinsuke Ito, Li Shen, Qing Dai, Susan C. Wu, Leonard B. Collins, James A. Swenberg, Chuan He, Yi Zhang, Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine Science. ,vol. 333, pp. 1300- 1303 ,(2011) , 10.1126/SCIENCE.1210597
M. Ko, H. S. Bandukwala, J. An, E. D. Lamperti, E. C. Thompson, R. Hastie, A. Tsangaratou, K. Rajewsky, S. B. Koralov, A. Rao, Ten-Eleven-Translocation 2 (TET2) negatively regulates homeostasis and differentiation of hematopoietic stem cells in mice Proceedings of the National Academy of Sciences of the United States of America. ,vol. 108, pp. 14566- 14571 ,(2011) , 10.1073/PNAS.1112317108