Exome sequencing reveals recurrent REV3L mutations in cisplatin-resistant squamous cell carcinoma of head and neck.

作者: Kie Kyon Huang , Kang Won Jang , Sangwoo Kim , Han Sang Kim , Sung-Moo Kim

DOI: 10.1038/SREP19552

关键词:

摘要: Dacomitinib, an irreversible pan-HER inhibitor, had shown modest clinical activity in squamous cell carcinoma of head and neck (SCCHN) patients. Therefore, validated predictive biomarkers are required to identify patients most likely benefit from this therapeutic option. To characterize the genetic landscape cisplatin-treated SCCHN genomes potential for dacomitinib sensitivity, we performed whole exome sequencing on 18 cisplatin-resistant metastatic tumors their matched germline DNA. Platinum-based chemotherapy elevated mutation rates compared chemotherapy-naive SCCHNs. Cisplatin-treated uniquely exhibited a novel mutational signature characterized by C:G A:T transversions at CCR sequence contexts that may have arisen due error-prone translesional synthesis. Somatic mutations REV3L, gene encoding catalytic subunit DNA polymerase ζ involved synthesis, significantly enriched subset who derived extended (P = 0.04). Functional assays showed loss-of-function REV3L dramatically enhanced sensitivity cells loss both translesion synthesis homologous recombination pathways. Our data suggest 'platinum' inactivation inform treatment options recurrent SCCHN.

参考文章(41)
Philip A. Knobel, Ilya N. Kotov, Emanuela Felley-Bosco, Rolf A. Stahel, Thomas M. Marti, Inhibition of REV3 Expression Induces Persistent DNA Damage and Growth Arrest in Cancer Cells Neoplasia. ,vol. 13, pp. 961- 970 ,(2011) , 10.1593/NEO.11828
Jacques Ferlay, Isabelle Soerjomataram, Rajesh Dikshit, Sultan Eser, Colin Mathers, Marise Rebelo, Donald Maxwell Parkin, David Forman, Freddie Bray, Cancer incidence and mortality worldwide: sources, methods and major patterns in GLOBOCAN 2012. International Journal of Cancer. ,vol. 136, ,(2015) , 10.1002/IJC.29210
Sigal Shachar, Omer Ziv, Sharon Avkin, Sheera Adar, John Wittschieben, Thomas Reißner, Stephen Chaney, Errol C Friedberg, Zhigang Wang, Thomas Carell, Nicholas Geacintov, Zvi Livneh, Two-polymerase mechanisms dictate error-free and error-prone translesion DNA synthesis in mammals The EMBO Journal. ,vol. 28, pp. 383- 393 ,(2009) , 10.1038/EMBOJ.2008.281
Zhihui Feng, Lisa Kachnic, Junran Zhang, Simon N. Powell, Fen Xia, DNA Damage Induces p53-dependent BRCA1 Nuclear Export Journal of Biological Chemistry. ,vol. 279, pp. 28574- 28584 ,(2004) , 10.1074/JBC.M404137200
Liping Li, Hong Wang, Eddy S. Yang, Carlos L. Arteaga, Fen Xia, Erlotinib attenuates homologous recombinational repair of chromosomal breaks in human breast cancer cells. Cancer Research. ,vol. 68, pp. 9141- 9146 ,(2008) , 10.1158/0008-5472.CAN-08-1127
K. Wang, M. Li, H. Hakonarson, ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data Nucleic Acids Research. ,vol. 38, ,(2010) , 10.1093/NAR/GKQ603
Michael S Lawrence, Carrie Sougnez, Lee Lichtenstein, Kristian Cibulskis, Eric Lander, Stacey B Gabriel, Gad Getz, Adrian Ally, Miruna Balasundaram, Inanc Birol, Reanne Bowlby, Denise Brooks, Yaron SN Butterfield, Rebecca Carlsen, Dean Cheng, Andy Chu, Noreen Dhalla, Ranabir Guin, Robert A Holt, Steven JM Jones, Darlene Lee, Haiyan I Li, Marco A Marra, Michael Mayo, Richard A Moore, Andrew J Mungall, A Gordon Robertson, Jacqueline E Schein, Payal Sipahimalani, Angela Tam, Nina Thiessen, Tina Wong, Alexei Protopopov, Netty Santoso, Semin Lee, Michael Parfenov, Jianhua Zhang, Harshad S Mahadeshwar, Jiabin Tang, Xiaojia Ren, Sahil Seth, Psalm Haseley, Dong Zeng, Lixing Yang, Andrew W Xu, Xingzhi Song, Angeliki Pantazi, Christopher A Bristow, Angela Hadjipanayis, Jonathan Seidman, Lynda Chin, Peter J Park, Raju Kucherlapati, Rehan Akbani, Tod Casasent, Wenbin Liu, Yiling Lu, Gordon Mills, Thomas Motter, John Weinstein, Lixia Diao, Jing Wang, You Hong Fan, Jinze Liu, Kai Wang, J Todd Auman, Saianand Balu, Thomas Bodenheimer, Elizabeth Buda, Neil D Hayes, Katherine A Hoadley, Alan P Hoyle, Stuart R Jefferys, Corbin D Jones, Patrick K Kimes, Yufeng Liu, JS Marron, Shaowu Meng, Piotr A Mieczkowski, Lisle E Mose, Joel S Parker, Charles M Perou, Jan F Prins, Jeffrey Roach, Yan Shi, Comprehensive genomic characterization of head and neck squamous cell carcinomas Nature. ,vol. 517, pp. 576- 582 ,(2015) , 10.1038/NATURE14129
N. Agrawal, M. J. Frederick, C. R. Pickering, C. Bettegowda, K. Chang, R. J. Li, C. Fakhry, T.-X. Xie, J. Zhang, J. Wang, N. Zhang, A. K. El-Naggar, S. A. Jasser, J. N. Weinstein, L. Trevino, J. A. Drummond, D. M. Muzny, Y. Wu, L. D. Wood, R. H. Hruban, W. H. Westra, W. M. Koch, J. A. Califano, R. A. Gibbs, D. Sidransky, B. Vogelstein, V. E. Velculescu, N. Papadopoulos, D. A. Wheeler, K. W. Kinzler, J. N. Myers, Exome sequencing of head and neck squamous cell carcinoma reveals inactivating mutations in NOTCH1 Science. ,vol. 333, pp. 1154- 1157 ,(2011) , 10.1126/SCIENCE.1206923
Ludmil B. Alexandrov, Serena Nik-Zainal, David C. Wedge, Peter J. Campbell, Michael R. Stratton, Deciphering Signatures of Mutational Processes Operative in Human Cancer Cell Reports. ,vol. 3, pp. 246- 259 ,(2013) , 10.1016/J.CELREP.2012.12.008