摘要: … sequence alignment by searching first for common words or k-tuples in the query sequence and each database sequence. … same length, BLAST confines the search to the words that are …
cshprotocols.org参考文章(7)
Jean-Michel Claverie, Effective large-scale sequence similarity searches. Methods in Enzymology. ,vol. 266, pp. 212- 227 ,(1996) , 10.1016/S0076-6879(96)66016-9
Steven Henikoff, Jorja G. Henikoff, Embedding strategies for effective use of information from multiple sequence alignments. Protein Science. ,vol. 6, pp. 698- 705 ,(1997) , 10.1002/PRO.5560060319
John C. Wootton, Scott Federhen, Statistics of local complexity in amino acid sequences and sequence databases Computational Biology and Chemistry. ,vol. 17, pp. 149- 163 ,(1993) , 10.1016/0097-8485(93)85006-X
Jerzy Jurka, Repeats in genomic DNA: mining and meaning Current Opinion in Structural Biology. ,vol. 8, pp. 333- 337 ,(1998) , 10.1016/S0959-440X(98)80067-5
Jean-Michel Claverie, David J. States, Information enhancement methods for large scale sequence analysis Computational Biology and Chemistry. ,vol. 17, pp. 191- 201 ,(1993) , 10.1016/0097-8485(93)85010-A
S. E. Brenner, C. Chothia, T. J. P. Hubbard, Assessing sequence comparison methods with reliable structurally identified distant evolutionary relationships Proceedings of the National Academy of Sciences of the United States of America. ,vol. 95, pp. 6073- 6078 ,(1998) , 10.1073/PNAS.95.11.6073
K C Worley, B A Wiese, R F Smith, BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Research. ,vol. 5, pp. 173- 184 ,(1995) , 10.1101/GR.5.2.173