Origins of domestic dog in Southern East Asia is supported by analysis of Y-chromosome DNA

作者: Z-L Ding , M Oskarsson , A Ardalan , H Angleby , L-G Dahlgren

DOI: 10.1038/HDY.2011.114

关键词:

摘要: Global mitochondrial DNA (mtDNA) data indicates that the dog originates from domestication of wolf in Asia South Yangtze River (ASY), with minor genetic contributions dog–wolf hybridisation elsewhere. Archaeological and autosomal single nucleotide polymorphism have instead suggested dogs originate Europe and/or West but, because these datasets lack ASY, evidence pointing to ASY may been overlooked. Analyses additional markers for global datasets, including are therefore necessary test if mtDNA phylogeography reflects actual history not merely stochastic events or selection. Here, we analyse 14 437 bp Y-chromosome sequence 151 sampled worldwide. We found 28 haplotypes distributed five haplogroups. Two haplogroups were universally shared included three carried by 46% all dogs, but two other primarily restricted East Asia. Highest diversity virtually complete phylogenetic coverage was within ASY. The estimated 13–24 founders, there no indication post-domestication hybridisations. Thus, give strikingly similar pictures phylogeography, most importantly roughly 50% gene pools only has nearly full range diversity, such regions derive This corroborates principal, possibly sole region domestication, a large number wolves domesticated, subsequent contributed modestly pool.

参考文章(27)
Peter Savolainen, Ya-ping Zhang, Jing Luo, Joakim Lundeberg, Thomas Leitner, Genetic Evidence for an East Asian Origin of Domestic Dogs Science. ,vol. 298, pp. 1610- 1613 ,(2002) , 10.1126/SCIENCE.1073906
Stephan C. Schuster, Webb Miller, Aakrosh Ratan, Lynn P. Tomsho, Belinda Giardine, Lindsay R. Kasson, Robert S. Harris, Desiree C. Petersen, Fangqing Zhao, Ji Qi, Can Alkan, Jeffrey M. Kidd, Yazhou Sun, Daniela I. Drautz, Pascal Bouffard, Donna M. Muzny, Jeffrey G. Reid, Lynne V. Nazareth, Qingyu Wang, Richard Burhans, Cathy Riemer, Nicola E. Wittekindt, Priya Moorjani, Elizabeth A. Tindall, Charles G. Danko, Wee Siang Teo, Anne M. Buboltz, Zhenhai Zhang, Qianyi Ma, Arno Oosthuysen, Abraham W. Steenkamp, Hermann Oostuisen, Philippus Venter, John Gajewski, Yu Zhang, B. Franklin Pugh, Kateryna D. Makova, Anton Nekrutenko, Elaine R. Mardis, Nick Patterson, Tom H. Pringle, Francesca Chiaromonte, James C. Mullikin, Evan E. Eichler, Ross C. Hardison, Richard A. Gibbs, Timothy T. Harkins, Vanessa M. Hayes, Complete Khoisan and Bantu genomes from southern Africa Nature. ,vol. 463, pp. 943- 947 ,(2010) , 10.1038/NATURE08795
Kerstin Lindblad-Toh, Claire M Wade, Tarjei S Mikkelsen, Elinor K Karlsson, David B Jaffe, Michael Kamal, Michele Clamp, Jean L Chang, Edward J Kulbokas III, Michael C Zody, Evan Mauceli, Xiaohui Xie, Matthew Breen, Robert K Wayne, Elaine A Ostrander, Chris P Ponting, Francis Galibert, Douglas R Smith, Pieter J DeJong, Ewen Kirkness, Pablo Alvarez, Tara Biagi, William Brockman, Jonathan Butler, Chee-Wye Chin, April Cook, James Cuff, Mark J Daly, David DeCaprio, Sante Gnerre, Manfred Grabherr, Manolis Kellis, Michael Kleber, Carolyne Bardeleben, Leo Goodstadt, Andreas Heger, Christophe Hitte, Lisa Kim, Klaus-Peter Koepfli, Heidi G Parker, John P Pollinger, Stephen MJ Searle, Nathan B Sutter, Rachael Thomas, Caleb Webber, Eric S Lander, None, Genome sequence, comparative analysis and haplotype structure of the domestic dog Nature. ,vol. 438, pp. 803- 819 ,(2005) , 10.1038/NATURE04338
Guillaume Laval, Stefan Schneider, Laurent Georges Louis Excoffier, Arlequin (version 3.0): An integrated software package for population genetics data analysis Evolutionary Bioinformatics. ,vol. 1, pp. 47- 50 ,(2005) , 10.4137/EBO.S0
J.-F. Pang, C. Kluetsch, X.-J. Zou, A.-b. Zhang, L.-Y. Luo, H. Angleby, A. Ardalan, C. Ekstrom, A. Skollermo, J. Lundeberg, S. Matsumura, T. Leitner, Y.-P. Zhang, P. Savolainen, mtDNA Data Indicate a Single Origin for Dogs South of Yangtze River, Less Than 16,300 Years Ago, from Numerous Wolves Molecular Biology and Evolution. ,vol. 26, pp. 2849- 2864 ,(2009) , 10.1093/MOLBEV/MSP195
Ewen F Kirkness, Vineet Bafna, Aaron L Halpern, Samuel Levy, Karin Remington, Douglas B Rusch, Arthur L Delcher, Mihai Pop, Wei Wang, Claire M Fraser, J Craig Venter, The dog genome: Survey sequencing and comparative analysis Science. ,vol. 301, pp. 1898- 1903 ,(2003) , 10.1126/SCIENCE.1086432
Richard H Tedford, Xiaoming Wang, Beryl E Taylor, None, Phylogenetic Systematics of the North American Fossil Caninae (Carnivora: Canidae) Bulletin of the American Museum of Natural History. ,vol. 2009, pp. 1- 218 ,(2009) , 10.1206/574.1
Phillip A Morin, Gordon Luikart, Robert K Wayne, SNP Workshop Group, None, SNPs in ecology, evolution and conservation Trends in Ecology and Evolution. ,vol. 19, pp. 208- 216 ,(2004) , 10.1016/J.TREE.2004.01.009
P. Skoglund, A. Gotherstrom, M. Jakobsson, Estimation of population divergence times from non-overlapping genomic sequences: examples from dogs and wolves Molecular Biology and Evolution. ,vol. 28, pp. 1505- 1517 ,(2011) , 10.1093/MOLBEV/MSQ342