Bioinformatics: Identification of Markers from Next-Generation Sequence Data
作者： Pradeep Ruperao , David Edwards
DOI: 10.1007/978-1-4939-1966-6_3
关键词:
摘要: With the advent of sequencing technology, next-generation (NGS) technology has dramatically revolutionized plant genomics. NGS combined with new software tools enables discovery, validation, and assessment genetic markers on a large scale. Among different systems, simple sequence repeats (SSRs) Single nucleotide polymorphisms (SNPs) are choice for genetics breeding. SSR have been large-scale characterization germplasm collections, construction maps, QTL identification. Similarly, SNPs most abundant variations higher frequencies throughout genome species. This chapter discusses various available assembly widely focuses SNP marker discovery.
springer.com
uq.edu.au参考文章(106)
Jacqueline Batley, Erica Jewell, David Edwards, Automated discovery of single nucleotide polymorphism and simple sequence repeat molecular genetic markers. Methods of Molecular Biology. ,vol. 406, pp. 473- 494 ,(2007) , 10.1007/978-1-59745-535-0_23
Chang Pyo Hong, Prikshit Plaha, Dal Hoe Koo, Tae-Jin Yang, Su Ryun Choi, Young Ki Lee, Taesik Uhm, Jae-Wook Bang, David Edwards, Ian Bancroft, Beom-Seok Park, Jungho Lee, Yong Pyo Lim, None, A Survey of the Brassica rapa genome by BAC-end sequence analysis and comparison with Arabidopsis thaliana. Molecules and Cells. ,vol. 22, pp. 300- 307 ,(2006)
Jacqueline Batley, David Edwards, Mining for SNPs and SSRs Using SNPServer, dbSNP and SSR Taxonomy Tree Methods in Molecular Biology. ,vol. 537, pp. 303- 321 ,(2009) , 10.1007/978-1-59745-251-9_15
Chris Duran, David Edwards, Jacqueline Batley, Molecular Marker Discovery and Genetic Map Visualisation Bioinformatics. pp. 165- 189 ,(2009) , 10.1007/978-0-387-92738-1_8
Nikki Appleby, David Edwards, Jacqueline Batley, New Technologies for Ultra-High Throughput Genotyping in Plants Methods of Molecular Biology. ,vol. 513, pp. 19- 39 ,(2009) , 10.1007/978-1-59745-427-8_2
Erica Logan, Christopher G Love, David Edwards, Jennifer C Mortimer, Jacqueline Batley, Simple sequence repeat (SSR) and GC distribution in the Arabidopsis thaliana genome. Journal of Plant Biotechnology. ,vol. 7, pp. 17- 25 ,(2005)
Chris Duran, David Edwards, Jacqueline Batley, Genetic maps and the use of synteny. Methods of Molecular Biology. ,vol. 513, pp. 41- 55 ,(2009) , 10.1007/978-1-59745-427-8_3
David Edwards, John W. Forster, Noel O. I. Cogan, Jacqueline Batley, David Chagné, Single Nucleotide Polymorphism Discovery Association Mapping in Plants. pp. 53- 76 ,(2007) , 10.1007/978-0-387-36011-9_4
David Edwards, John W. Forster, David Chagné, Jacqueline Batley, What Are SNPs? Association Mapping in Plants. pp. 41- 52 ,(2007) , 10.1007/978-0-387-36011-9_3
David Edwards, Bioinformatics and Plant Genomics for Staple Crops Improvement Breeding Major Food Staples. pp. 93- 106 ,(2008) , 10.1002/9780470376447.CH4