Real-time PCR machine system modeling and a systematic approach for the robust design of a real-time PCR-on-a-chip system.

作者: Da-Sheng Lee

DOI: 10.3390/S100100697

关键词:

摘要: Chip-based DNA quantification systems are widespread, and used in many point-of-care applications. However, instruments for such applications may not be maintained or calibrated regularly. Since machine reliability is a key issue normal operation, this study presents system model of the real-time Polymerase Chain Reaction (PCR) to analyze instrument design through numerical experiments. Based on analysis, systematic approach was developed lower variation achieve robust PCR-on-a-chip system. Accelerated lift testing adopted evaluate chip prototype. According life test plan, proposed simulated work continuously over three years with similar reproducibility quantification. This only shows robustness lab-on-a-chip system, but also verifies effectiveness our method achieving design.

参考文章(44)
Laurent Perreard, Cheng Fan, John F Quackenbush, Michael Mullins, Nicholas P Gauthier, Edward Nelson, Mary Mone, Heidi Hansen, Saundra S Buys, Karen Rasmussen, Alejandra Ruiz Orrico, Donna Dreher, Rhonda Walters, Joel Parker, Zhiyuan Hu, Xiaping He, Juan P Palazzo, Olufunmilayo I Olopade, Aniko Szabo, Charles M Perou, Philip S Bernard, Classification and risk stratification of invasive breast carcinomas using a real-time quantitative RT-PCR assay Breast Cancer Research. ,vol. 8, pp. 1- 11 ,(2006) , 10.1186/BCR1399
EM Sale, CP Hodgkinson, NP Jones, GJ Sale, Role of protein kinase B in breast cancer Breast Cancer Research. ,vol. 8, pp. 23- ,(2006) , 10.1186/BCR1578
C.T. Wittwer, K.M. Ririe, R.V. Andrew, D.A. David, R.A. Gundry, U.J. Balis, The LightCycler: a microvolume multisample fluorimeter with rapid temperature control BioTechniques. ,vol. 22, pp. 176- 181 ,(1997) , 10.2144/97221PF02
Jo Vandesompele, Katleen De Preter, Filip Pattyn, Bruce Poppe, Nadine Van Roy, Anne De Paepe, Frank Speleman, Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes Genome Biology. ,vol. 3, pp. 1- 12 ,(2002) , 10.1186/GB-2002-3-7-RESEARCH0034
Carl T. Wittwer, Mark G. Herrmann, Alan A. Moss, Randy P. Rasmussen, Continuous fluorescence monitoring of rapid cycle DNA amplification. BioTechniques. ,vol. 22, pp. 130- 138 ,(1997) , 10.2144/000114043
Maimuna E Mendy, Steve Kaye, Marianne van der Sande, Pura Rayco-Solon, Pauline A Waight, Deborah Shipton, Dorka Awi, Paul Snell, Hilton Whittle, Samuel J McConkey, Application of real-time PCR to quantify hepatitis B virus DNA in chronic carriers in The Gambia. Virology Journal. ,vol. 3, pp. 23- 23 ,(2006) , 10.1186/1743-422X-3-23
Li-Xuan Qin, RichardP Beyer, FrancescaN Hudson, NancyJ Linford, DarylE Morris, KathleenF Kerr, Evaluation of methods for oligonucleotide array data via quantitative real-time PCR BMC Bioinformatics. ,vol. 7, pp. 23- 23 ,(2006) , 10.1186/1471-2105-7-23
Rosanna Weksberg, Simon Hughes, Laura Moldovan, Anne S Bassett, Eva WC Chow, Jeremy A Squire, A method for accurate detection of genomic microdeletions using real-time quantitative PCR BMC Genomics. ,vol. 6, pp. 180- 180 ,(2005) , 10.1186/1471-2164-6-180
Marjo V Smith, Chris R Miller, Michael Kohn, Nigel J Walker, Chris J Portier, Absolute estimation of initial concentrations of amplicon in a real-time RT-PCR process BMC Bioinformatics. ,vol. 8, pp. 409- 409 ,(2007) , 10.1186/1471-2105-8-409
Alison E. Director-Myska, Wendy K. Pogozelski, Richard S. Lofts, Pataje G.S. Prasanna, Christine J.C. Hamel, William F. Blakely, Quantitative plasmid mixture analysis using the fluorogenic 5′‐nuclease polymerase chain reaction assay† Environmental and Molecular Mutagenesis. ,vol. 37, pp. 147- 154 ,(2001) , 10.1002/EM.1022