AgBase: supporting functional modeling in agricultural organisms
作者： Fiona M. McCarthy , Cathy R. Gresham , Teresia J. Buza , Philippe Chouvarine , Lakshmi R. Pillai
DOI: 10.1093/NAR/GKQ1115
关键词:
摘要: AgBase (http://www.agbase.msstate.edu/) provides resources to facilitate modeling of functional genomics data and structural annotation agriculturally important animal, plant, microbe parasite genomes. The website is redesigned improve accessibility ease use, including improved search capabilities. Expanded capabilities include new dedicated pages for horse, cat, dog, cotton, rice soybean. We currently provide 590 240 Gene Ontology (GO) annotations 105 454 gene products in 64 different species, GO linked transcripts represented on agricultural microarrays. For many these arrays, this the only available. are available download we comprehensive, species-specific files 18 organisms. tools at have been expanded several existing based upon user feedback. One seven AgBase, GOModeler, supports hypothesis testing from data. host associated databases genome browsers three pathogens. Moreover, comprehensive training (including worked examples tutorials) via links Educational Resources website.
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