Array-based Comparative Genomic Hybridization in the Analysis of Genomic Alterations in Human Disease

作者: Marek Skacel , Ana Ambu Siva , Raymond R. Tubb

DOI: 10.1016/B978-044306901-7.50012-2

关键词:

摘要: Besides their utilization in gene expression studies, the concept of using microarrays has been explored study other molecular genetic aspects human disease. This includes use arrays for detection gains and losses genomic DNA. Fluctuations DNA sequence copy number with concomitant microscopic or cryptic chromosomal aberrations are becoming increasingly correlated phenotypic abnormalities. Characteristic isolated abnormalities occur a variety inherited syndromes, amplification, deletion, both is common alteration occurring cancer cells. The development many neoplasms follows defined series histopathologic stages, process that involves multiple changes such as translocations, deletions, duplications, alterations changes. Importantly, often involve areas harboring oncogenes tumor suppression genes play an important role cell cycle control, affects growth.

参考文章(78)
Daniel Pinkel, Richard Segraves, Damir Sudar, Steven Clark, Ian Poole, David Kowbel, Colin Collins, Wen-Lin Kuo, Chira Chen, Ye Zhai, Shanaz H. Dairkee, Britt-marie Ljung, Joe W. Gray, Donna G. Albertson, High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays Nature Genetics. ,vol. 20, pp. 207- 211 ,(1998) , 10.1038/2524
Norma J. Nowak, Devin E. McQuaid, Ping Liang, Ganesh Shankar, Michael R. Rossi, Jeffrey M. Conroy, Daniel G. Gaile, John Kenneth Cowell, aCGHViewer: A Generic Visualization Tool For aCGH data Cancer Informatics. ,vol. 2, pp. 36- 43 ,(2006) , 10.4137/CIN.S0
Gayatry Mohapatra, Rebecca A. Betensky, Ezra R. Miller, Bjorn Carey, Leah D. Gaumont, David A. Engler, David N. Louis, Glioma Test Array for Use with Formalin-Fixed, Paraffin-Embedded Tissue: Array Comparative Genomic Hybridization Correlates with Loss of Heterozygosity and Fluorescence in Situ Hybridization The Journal of Molecular Diagnostics. ,vol. 8, pp. 268- 276 ,(2006) , 10.2353/JMOLDX.2006.050109
David S P Tan, Maryou B K Lambros, Rachael Natrajan, Jorge S Reis-Filho, Getting it right: designing microarray (and not ‘microawry’) comparative genomic hybridization studies for cancer research Laboratory Investigation. ,vol. 87, pp. 737- 754 ,(2007) , 10.1038/LABINVEST.3700593
A Kallioniemi, O. Kallioniemi, D Sudar, D Rutovitz, J. Gray, F Waldman, D Pinkel, Comparative Genomic Hybridization for Molecular Cytogenetic Analysis of Solid Tumors Science. ,vol. 258, pp. 818- 821 ,(1992) , 10.1126/SCIENCE.1359641
Michael R. Rossi, Jeffrey La Duca, Sei-Ichi Matsui, Norma J. Nowak, Lesleyann Hawthorn, John K. Cowell, Novel amplicons on the short arm of chromosome 7 identified using high resolution array CGH contain over expressed genes in addition to EGFR in glioblastoma multiforme Genes, Chromosomes and Cancer. ,vol. 44, pp. 392- 404 ,(2005) , 10.1002/GCC.20256
Suzanne E. Little, Raisa Vuononvirta, Jorge S. Reis-Filho, Rachael Natrajan, Marjan Iravani, Kerry Fenwick, Alan Mackay, Alan Ashworth, Kathy Pritchard-Jones, Chris Jones, Array CGH using whole genome amplification of fresh-frozen and formalin-fixed, paraffin-embedded tumor DNA. Genomics. ,vol. 87, pp. 298- 306 ,(2006) , 10.1016/J.YGENO.2005.09.019
Marcelo L. Larramendy, Sippy Kaur, Catarina Svarvar, Tom Böhling, Sakari Knuutila, Gene copy number profiling of soft-tissue leiomyosarcomas by array-comparative genomic hybridization Cancer Genetics and Cytogenetics. ,vol. 169, pp. 94- 101 ,(2006) , 10.1016/J.CANCERGENCYTO.2006.01.008
Rachael Natrajan, Jorge S. Reis-Filho, Suzanne E. Little, Boo Messahel, Marie-Anne Brundler, Jeffrey S. Dome, Paul E. Grundy, Gordan M. Vujanic, Kathy Pritchard-Jones, Chris Jones, Blastemal Expression of Type I Insulin-Like Growth Factor Receptor in Wilms' Tumors Is Driven by Increased Copy Number and Correlates with Relapse Cancer Research. ,vol. 66, pp. 11148- 11155 ,(2006) , 10.1158/0008-5472.CAN-06-1931
Michael R. Rossi, Daniel Gaile, Jeffrey LaDuca, Sei-Ichi Matsui, Jeffrey Conroy, Devin McQuaid, David Chervinsky, Roger Eddy, Hai-Shen Chen, Gene H. Barnett, Norma J. Nowak, John K. Cowell, Identification of consistent novel submegabase deletions in low-grade oligodendrogliomas using array-based comparative genomic hybridization. Genes, Chromosomes and Cancer. ,vol. 44, pp. 85- 96 ,(2005) , 10.1002/GCC.20218