Genome-scale CRISPR screens are efficient in non-homologous end-joining deficient cells.

作者: Joana Ferreira da Silva , Sejla Salic , Marc Wiedner , Paul Datlinger , Patrick Essletzbichler

DOI: 10.1038/S41598-019-52078-9

关键词:

摘要: The mutagenic repair of Cas9 generated breaks is thought to predominantly rely on non-homologous end-joining (NHEJ), leading insertions and deletions within DNA that culminate in gene knock-out (KO). In this study, by taking focused as well genome-wide approaches, we show pathway dispensable for the such lesions. Genetic ablation NHEJ fully compensated alternative end joining (alt-EJ), a POLQ-dependent manner, resulting distinct signature with larger may be exploited large-scale genome editing. Moreover, cells deficient both alt-EJ were still able CRISPR-mediated double-strand breaks, highlighting how little yet known about mechanisms CRISPR-based

参考文章(39)
J. Guirouilh-Barbat, E. Rass, I. Plo, P. Bertrand, B. S. Lopez, Defects in XRCC4 and KU80 differentially affect the joining of distal nonhomologous ends Proceedings of the National Academy of Sciences of the United States of America. ,vol. 104, pp. 20902- 20907 ,(2007) , 10.1073/PNAS.0708541104
Wenxia Jiang, Jennifer L. Crowe, Xiangyu Liu, Satoshi Nakajima, Yunyue Wang, Chen Li, Brian J. Lee, Richard L. Dubois, Chao Liu, Xiaochun Yu, Li Lan, Shan Zha, Differential Phosphorylation of DNA-PKcs Regulates the Interplay between End-Processing and End-Ligation during Nonhomologous End-Joining Molecular Cell. ,vol. 58, pp. 172- 185 ,(2015) , 10.1016/J.MOLCEL.2015.02.024
Ophir Shalem, Neville E. Sanjana, Ella Hartenian, Xi Shi, David A. Scott, Tarjei S. Mikkelsen, Dirk Heckl, Benjamin L. Ebert, David E. Root, John G. Doench, Feng Zhang, Genome-Scale CRISPR-Cas9 Knockout Screening in Human Cells Science. ,vol. 343, pp. 84- 87 ,(2014) , 10.1126/SCIENCE.1247005
Raphael Ceccaldi, Jessica C. Liu, Ravindra Amunugama, Ildiko Hajdu, Benjamin Primack, Mark I. R. Petalcorin, Kevin W. O’Connor, Panagiotis A. Konstantinopoulos, Stephen J. Elledge, Simon J. Boulton, Timur Yusufzai, Alan D. D’Andrea, Homologous-recombination-deficient tumours are dependent on Polθ-mediated repair Nature. ,vol. 518, pp. 258- 262 ,(2015) , 10.1038/NATURE14184
Noritaka Adachi, Hiromi Suzuki, Susumu Iiizumi, Hideki Koyama, Hypersensitivity of Nonhomologous DNA End-joining Mutants to VP-16 and ICRF-193 Journal of Biological Chemistry. ,vol. 278, pp. 35897- 35902 ,(2003) , 10.1074/JBC.M306500200
Prashant Mali, Luhan Yang, Kevin M Esvelt, John Aach, Marc Guell, James E DiCarlo, Julie E Norville, George M Church, RNA-Guided Human Genome Engineering via Cas9 Science. ,vol. 339, pp. 823- 826 ,(2013) , 10.1126/SCIENCE.1232033
S Rogers, R Wells, M Rechsteiner, Amino acid sequences common to rapidly degraded proteins: the PEST hypothesis Science. ,vol. 234, pp. 364- 368 ,(1986) , 10.1126/SCIENCE.2876518
Neville E Sanjana, Ophir Shalem, Feng Zhang, Improved vectors and genome-wide libraries for CRISPR screening. Nature Methods. ,vol. 11, pp. 783- 784 ,(2014) , 10.1038/NMETH.3047
Jeffry D Sander, J Keith Joung, CRISPR-Cas systems for editing, regulating and targeting genomes Nature Biotechnology. ,vol. 32, pp. 347- 355 ,(2014) , 10.1038/NBT.2842