Identification of diatom isolates from the Gulf of Gdansk: testing of species identifications using morphology, 18S rDNA sequencing and DNA barcodes of strains from the culture collection of Baltic algae (CCBA)
作者： Filip Pniewski , Thomas Friedl , Adam Latała
DOI: 10.2478/V10009-010-0031-7
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摘要: Eighteen strains of diatoms isolated from different phytoplankton and microphytobenthic assemblages in the Gulf Gdansk (Baltic Sea, Poland) maintained at Culture Collection Baltic Algae (CCBA) were investigated for their species identifications. The latter tested by phylogenetic analyses nearly full 18S rDNA sequences as well through sequence comparisons 5.8S+ITS2 fragments use DNA barcode. planktonic readily identified a member Cyclotella meneghiniana complex Skeletonema marinoi, respectively, both phylogenies barcoding. In contrast, pennate diatom suitability identification
metapress.com参考文章(51)
Linda Medlin, A.-M. M. Schmid, W. H. C. F. Kooistra, A review of the evolution of the diatoms - a total approach using molecules, morphology and geology EPIC3The origin and early evolution of the diatoms: fossil, molecular and biogeographical approaches. A. Witkowski & J. Sieminska [eds.], Polish Academy of Sciences, Krakow, Poland, pp., pp. 13-35. pp. 13- 35 ,(2000)
H. Lange-Bertalot, Navicula sensu stricto ; 10 genera separated from navicula sensu lato ; Frustulia Diatoms of Europe. Diatoms of the European inland waters and comparable habitats. ,vol. 2, pp. 526- ,(2001)
A. Witkowski, H. Lange-Bertalot, D. Metzeltin, Diatom flora of marine coasts I ,(2000)
T A Hall, BIOEDIT: A USER-FRIENDLY BIOLOGICAL SEQUENCE ALIGNMENT EDITOR AND ANALYSIS PROGRAM FOR WINDOWS 95/98/ NT Nucleic Acids Symposium Series. ,vol. 41, pp. 95- 98 ,(1999) , 10.14601/PHYTOPATHOL_MEDITERR-14998U1.29
Jaap S Sinninghe Damsté, Gerard Muyzer, Ben Abbas, Sebastiaan W Rampen, Guillaume Massé, W Guy Allard, Simon T Belt, Jean-Michel Robert, Steven J Rowland, J Michael Moldowan, Silvana M Barbanti, Frederick J Fago, Peter Denisevich, Jeremy Dahl, Luiz AF Trindade, Stefan Schouten, The Rise of the Rhizosolenid Diatoms Science. ,vol. 304, pp. 584- 587 ,(2004) , 10.1126/SCIENCE.1096806
Adam Latała, Sabina Jodłowska, Filip Pniewski, Culture Collection of Baltic Algae (CCBA) and characteristic of some strains by factorial experiment approach Algological Studies. ,vol. 122, pp. 137- 154 ,(2006) , 10.1127/1864-1318/2006/0122-0137
Wiebe H.C.F. Kooistra, Linda K. Medlin, Evolution of the Diatoms (Bacillariophyta): IV. A Reconstruction of Their Age from Small Subunit rRNA Coding Regions and the Fossil Record Molecular Phylogenetics and Evolution. ,vol. 6, pp. 391- 407 ,(1996) , 10.1006/MPEV.1996.0088
Bland J Finlay, Elaine B Monaghan, Stephen C Maberly, Hypothesis: The Rate and Scale of Dispersal of Freshwater Diatom Species is a Function of their Global Abundance Protist. ,vol. 153, pp. 261- 273 ,(2002) , 10.1078/1434-4610-00103
H. Lange-Bertalot, A. Witkowski, B. Bogaczewicz-Adamczak, A. Zgrundo, Rare and new small-celled taxa of Navicula s. str. in the Gulf of Gdansk and in its freshwater affluents Limnologica. ,vol. 33, pp. 258- 270 ,(2003) , 10.1016/S0075-9511(03)80021-X
Linda K. Medlin, Irena Kaczmarska, Evolution of the diatoms: V. Morphological and cytological support for the major clades and a taxonomic revision Phycologia. ,vol. 43, pp. 245- 270 ,(2004) , 10.2216/I0031-8884-43-3-245.1