Shared heritability and functional enrichment across six solid cancers

作者: Xia Jiang , Hilary K Finucane , Fredrick R Schumacher , Stephanie L Schmit , Jonathan P Tyrer

DOI: 10.1038/S41467-018-08054-4

关键词:

摘要: Quantifying the genetic correlation between cancers can provide important insights into mechanisms driving cancer etiology. Using genome-wide association study summary statistics across six types based on a total of 296,215 cases and 301,319 controls European ancestry, here we estimate pair-wise correlations breast, colorectal, head/neck, lung, ovary prostate cancer, 38 other diseases. We observed statistically significant lung head/neck (rg = 0.57, p = 4.6 × 10−8), breast ovarian (rg = 0.24, p = 7 × 10−5), (rg = 0.18, p =1.5 × 10−6) colorectal (rg = 0.15, p = 1.1 × 10−4). also found that multiple are genetically correlated with non-cancer traits including smoking, psychiatric diseases metabolic characteristics. Functional enrichment analysis revealed excess contribution conserved regulatory regions to heritability. Our comprehensive cross-cancer heritability suggests solid tumors arising tissues share in part common germline basis.

参考文章(63)
Hilary K Finucane, Brendan Bulik-Sullivan, Alexander Gusev, Gosia Trynka, Yakir Reshef, Po-Ru Loh, Verneri Anttila, Han Xu, Chongzhi Zang, Kyle Farh, Stephan Ripke, Felix R Day, ReproGen Consortium, Schizophrenia Working Group of the Psychiatric Genomics Consortium, Raci Consortium, Shaun Purcell, Eli Stahl, Sara Lindstrom, John RB Perry, Yukinori Okada, Soumya Raychaudhuri, Mark J Daly, Nick Patterson, Benjamin M Neale, Alkes L Price, None, Partitioning heritability by functional annotation using genome-wide association summary statistics Nature Genetics. ,vol. 47, pp. 1228- 1235 ,(2015) , 10.1038/NG.3404
Tinca J C Polderman, Beben Benyamin, Christiaan A de Leeuw, Patrick F Sullivan, Arjen van Bochoven, Peter M Visscher, Danielle Posthuma, Meta-analysis of the heritability of human traits based on fifty years of twin studies Nature Genetics. ,vol. 47, pp. 702- 709 ,(2015) , 10.1038/NG.3285
Felix R Day, Katherine S Ruth, Deborah J Thompson, Kathryn L Lunetta, Natalia Pervjakova, Daniel I Chasman, Lisette Stolk, Hilary K Finucane, Patrick Sulem, Brendan Bulik-Sullivan, Tõnu Esko, Andrew D Johnson, Cathy E Elks, Nora Franceschini, Chunyan He, Elisabeth Altmaier, Jennifer A Brody, Lude L Franke, Jennifer E Huffman, Margaux F Keller, Patrick F McArdle, Teresa Nutile, Eleonora Porcu, Antonietta Robino, Lynda M Rose, Ursula M Schick, Jennifer A Smith, Alexander Teumer, Michela Traglia, Dragana Vuckovic, Jie Yao, Wei Zhao, Eva Albrecht, Najaf Amin, Tanguy Corre, Jouke-Jan Hottenga, Massimo Mangino, Albert V Smith, Toshiko Tanaka, Gonçalo R Abecasis, Irene L Andrulis, Hoda Anton-Culver, Antonis C Antoniou, Volker Arndt, Alice M Arnold, Caterina Barbieri, Matthias W Beckmann, Alicia Beeghly-Fadiel, Javier Benitez, Leslie Bernstein, Suzette J Bielinski, Carl Blomqvist, Eric Boerwinkle, Natalia V Bogdanova, Stig E Bojesen, Manjeet K Bolla, Anne-Lise Borresen-Dale, Thibaud S Boutin, Hiltrud Brauch, Hermann Brenner, Thomas Brüning, Barbara Burwinkel, Archie Campbell, Harry Campbell, Stephen J Chanock, J Ross Chapman, Yii-Der Ida Chen, Georgia Chenevix-Trench, Fergus J Couch, Andrea D Coviello, Angela Cox, Kamila Czene, Hatef Darabi, Immaculata De Vivo, Ellen W Demerath, Joe Dennis, Peter Devilee, Thilo Dörk, Isabel dos-Santos-Silva, Alison M Dunning, John D Eicher, Peter A Fasching, Jessica D Faul, Jonine Figueroa, Dieter Flesch-Janys, Ilaria Gandin, Melissa E Garcia, Montserrat García-Closas, Graham G Giles, Giorgia G Girotto, Mark S Goldberg, Anna González-Neira, Mark O Goodarzi, Megan L Grove, Daniel F Gudbjartsson, Pascal Guénel, Xiuqing Guo, Christopher A Haiman, Per Hall, Ute Hamann, Brian E Henderson, Lynne J Hocking, Albert Hofman, Georg Homuth, Maartje J Hooning, John L Hopper, Frank B Hu, Jinyan Huang, Keith Humphreys, David J Hunter, Anna Jakubowska, Samuel E Jones, Maria Kabisch, David Karasik, Julia A Knight, Ivana Kolcic, Charles Kooperberg, Veli-Matti Kosma, Jennifer Kriebel, Vessela Kristensen, Diether Lambrechts, Claudia Langenberg, Jingmei Li, Xin Li, Sara Lindström, Yongmei Liu, Jian'an Luan, Jan Lubinski, Reedik Mägi, Arto Mannermaa, Judith Manz, Sara Margolin, Jonathan Marten, Nicholas G Martin, Corrado Masciullo, Alfons Meindl, Kyriaki Michailidou, Evelin Mihailov, Lili Milani, Roger L Milne, Martina Müller-Nurasyid, Michael Nalls, Benjamin M Neale, Heli Nevanlinna, Patrick Neven, Anne B Newman, Børge G Nordestgaard, Janet E Olson, Sandosh Padmanabhan, Paolo Peterlongo, None, Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair Nature Genetics. ,vol. 47, pp. 1294- 1303 ,(2015) , 10.1038/NG.3412
Christopher I Amos, Xifeng Wu, Peter Broderick, Ivan P Gorlov, Jian Gu, Timothy Eisen, Qiong Dong, Qing Zhang, Xiangjun Gu, Jayaram Vijayakrishnan, Kate Sullivan, Athena Matakidou, Yufei Wang, Gordon Mills, Kimberly Doheny, Ya-Yu Tsai, Wei Vivien Chen, Sanjay Shete, Margaret R Spitz, Richard S Houlston, Genome-wide association scan of tag SNPs identifies a susceptibility locus for lung cancer at 15q25.1 Nature Genetics. ,vol. 40, pp. 616- 622 ,(2008) , 10.1038/NG.109
Lori C Sakoda, Eric Jorgenson, John S Witte, Turning of COGS moves forward findings for hormonally mediated cancers Nature Genetics. ,vol. 45, pp. 345- 348 ,(2013) , 10.1038/NG.2587
Lara G. Sigurdardottir, Unnur A. Valdimarsdottir, Lorelei A. Mucci, Katja Fall, Jennifer R. Rider, Eva Schernhammer, Charles A. Czeisler, Lenore Launer, Tamara Harris, Meir J. Stampfer, Vilmundur Gudnason, Steven W. Lockley, Sleep disruption among older men and risk of prostate cancer. Cancer Epidemiology, Biomarkers & Prevention. ,vol. 22, pp. 872- 879 ,(2013) , 10.1158/1055-9965.EPI-12-1227-T
Denes Hnisz, Brian J. Abraham, Tong Ihn Lee, Ashley Lau, Violaine Saint-André, Alla A. Sigova, Heather A. Hoke, Richard A. Young, Super-Enhancers in the Control of Cell Identity and Disease Cell. ,vol. 155, pp. 934- 947 ,(2013) , 10.1016/J.CELL.2013.09.053
R. William Field, Brian L. Withers, Occupational and Environmental Causes of Lung Cancer Clinics in Chest Medicine. ,vol. 33, pp. 681- 703 ,(2012) , 10.1016/J.CCM.2012.07.001
Robin Andersson, Claudia Gebhard, Irene Miguel-Escalada, Ilka Hoof, Jette Bornholdt, Mette Boyd, Yun Chen, Xiaobei Zhao, Christian Schmidl, Takahiro Suzuki, Evgenia Ntini, Erik Arner, Eivind Valen, Kang Li, Lucia Schwarzfischer, Dagmar Glatz, Johanna Raithel, Berit Lilje, Nicolas Rapin, Frederik Otzen Bagger, Mette Jørgensen, Peter Refsing Andersen, Nicolas Bertin, Owen Rackham, A Maxwell Burroughs, J Kenneth Baillie, Yuri Ishizu, Yuri Shimizu, Erina Furuhata, Shiori Maeda, Yutaka Negishi, Christopher J Mungall, Terrence F Meehan, Timo Lassmann, Masayoshi Itoh, Hideya Kawaji, Naoto Kondo, Jun Kawai, Andreas Lennartsson, Carsten O Daub, Peter Heutink, David A Hume, Torben Heick Jensen, Harukazu Suzuki, Yoshihide Hayashizaki, Ferenc Müller, Fantom Consortium, Alistair RR Forrest, Piero Carninci, Michael Rehli, Albin Sandelin, None, An atlas of active enhancers across human cell types and tissues Nature. ,vol. 507, pp. 455- 461 ,(2014) , 10.1038/NATURE12787
Travis I Zack, Steven E Schumacher, Scott L Carter, Andrew D Cherniack, Gordon Saksena, Barbara Tabak, Michael S Lawrence, Cheng-Zhong Zhang, Jeremiah Wala, Craig H Mermel, Carrie Sougnez, Stacey B Gabriel, Bryan Hernandez, Hui Shen, Peter W Laird, Gad Getz, Matthew Meyerson, Rameen Beroukhim, Pan-cancer patterns of somatic copy number alteration Nature Genetics. ,vol. 45, pp. 1134- 1140 ,(2013) , 10.1038/NG.2760