Major histocompatibility complex class I binding predictions as a tool in epitope discovery.

作者: Claus Lundegaard , Ole Lund , Søren Buus , Morten Nielsen

DOI: 10.1111/J.1365-2567.2010.03300.X

关键词:

摘要: SummaryOver the last decade, in silico models of major histocompatibilitycomplex (MHC) class I pathway have developed significantly. Before, pep-tide binding could only be reliably modelled for a few human ormouse histocompatibility molecules; now, high-accuracy predictions areavailable any leucocyte antigen (HLA) -A or -B molecule withknown protein sequence. Furthermore, peptide to MHC mole-cules from several non-human primates, mouse strains and other mam-mals can now predicted. In this review, number differentprediction methods are briefly explained, highlighting most useful andhistorically important. Selected case stories, where these ‘reverse immu-nology’ systems been used actual epitope discovery, brieflyreviewed. We conclude that new generation discovery sys-tems has become highly efficient tool recom-mend less accurate prediction past abandoned,as obsolete.Keywords: cytotoxic T lymphocytes; prediction; leucocyteantigen; complex I; histocompatibilitycomplex–peptide

参考文章(104)
Dale F. Mierke, Maria Pellegrini, Receptor–Ligand Interactions Encyclopedia of Endocrine Diseases. pp. 163- 166 ,(2004) , 10.1016/B0-12-475570-4/01127-6
Markus Wulf, Petra Hoehn, Peter Trinder, Identification of Human MHC Class I Binding Peptides using the iTOPIA™− Epitope Discovery System Methods of Molecular Biology. ,vol. 524, pp. 361- 367 ,(2009) , 10.1007/978-1-59745-450-6_26
Pingping Guan, Irini A. Doytchinova, Darren R. Flower, The classification of HLA supertypes by GRID/CPCA and hierarchical clustering methods. Methods of Molecular Biology. ,vol. 409, pp. 143- 154 ,(2007) , 10.1007/978-1-60327-118-9_9
Stefan Stevanović, Jutta Bachmann, Hans-Georg Rammensee, MHC Ligands and Peptide Motifs ,(1998)
H. M. Grey, R. M. P. Brandt, J.-W. Drijfhout, R. T. Kubo, A. Sette, C. J. M. Melief, J. Sidney, W. M. Kast, Role of HLA-A motifs in identification of potential CTL epitopes in human papillomavirus type 16 E6 and E7 proteins. Journal of Immunology. ,vol. 152, pp. 3904- 3912 ,(1994)
A Townsend, K Kärre, J Bastin, L Foster, C Ohlén, Ljunggren H-G., Pillars article: Association of class I major histocompatibility heavy and light chains induced by viral peptides. Nature 1989. 340: 443-448. Journal of Immunology. ,vol. 179, pp. 4301- 4306 ,(2007)
Pierre Dönnes, Arne Elofsson, Prediction of MHC class I binding peptides, using SVMHC BMC Bioinformatics. ,vol. 3, pp. 25- 25 ,(2002) , 10.1186/1471-2105-3-25
M F del Guercio, S Southwood, R T Kubo, V H Engelhard, M Takiguchi, K Falk, O Rötzschke, H G Rammensee, J Sidney, E Appella, Several HLA alleles share overlapping peptide specificities. Journal of Immunology. ,vol. 154, pp. 247- 259 ,(1995)
Carina L Pérez, Mette V Larsen, Rasmus Gustafsson, Melissa M Norström, Ann Atlas, Douglas F Nixon, Morten Nielsen, Ole Lund, Annika C Karlsson, None, Broadly Immunogenic HLA Class I Supertype-Restricted Elite CTL Epitopes Recognized in a Diverse Population Infected with Different HIV-1 Subtypes The Journal of Immunology. ,vol. 180, pp. 5092- 5100 ,(2008) , 10.4049/JIMMUNOL.180.7.5092