Genotyping of 75 SNPs using arrays for individual identification in five population groups.

作者: Hsiao-Lin Hwa , Lawrence Shih Hsin Wu , Chun-Yen Lin , Tsun-Ying Huang , Hsiang-I Yin

DOI: 10.1007/S00414-015-1250-Y

关键词:

摘要: Single nucleotide polymorphism (SNP) typing offers promise to forensic genetics. Various strategies and panels for analyzing SNP markers individual identification have been published. However, the best with fewer identity SNPs all major population groups are still under discussion. This study aimed find more autosomal high heterozygosity among Asian populations. Ninety-six of 502 DNA samples from unrelated individuals five (208 Taiwanese Han, 83 Filipinos, 62 Thais, 69 Indonesians, 80 European, Near Eastern, or South ancestry) were analyzed using arrays in an initial screening, 75 (group A, 46 newly selected SNPs; B, 29 based on a previous panel) further statistical analyses. Some populations identified. The combined random match probability 40 45 was between 3.16 × 10−17 7.75 × 10−17 2.33 × 10−19 7.00 × 10−19, respectively, These loci offer comparable power short tandem repeats (STRs) routine profiling. In this study, we demonstrated genetic characteristics parameters groups. panel can provide valuable genotypic information be helpful casework these

参考文章(30)
Bruce Budowle, Tamyra R. Moretti, Anne L. Baumstark, Debra A. Defenbaugh, Kathleen M. Keys, Population data on the thirteen CODIS core short tandem repeat loci in African Americans, U.S. Caucasians, Hispanics, Bahamians, Jamaicans, and Trinidadians. Journal of Forensic Sciences. ,vol. 44, pp. 1277- 1286 ,(1999) , 10.1520/JFS14601J
J M. Bland, D. G Altman, Multiple significance tests: the Bonferroni method BMJ. ,vol. 310, pp. 170- 170 ,(1995) , 10.1136/BMJ.310.6973.170
Zhaoshu Zeng, Li Wang, Qingchuan Feng, Lirong Zhang, Li Lee, Lei Wang, Yangli Yue, Yu Fang, Weihong Yang, Hanmei Qiu, Ziming Dong, Evaluation of 96 SNPs in 14 populations for worldwide individual identification. Journal of Forensic Sciences. ,vol. 57, pp. 1031- 1035 ,(2012) , 10.1111/J.1556-4029.2012.02110.X
Carolyn R. Hill, Margaret C. Kline, Michael D. Coble, John M. Butler, Characterization of 26 miniSTR loci for improved analysis of degraded DNA samples. Journal of Forensic Sciences. ,vol. 53, pp. 73- 80 ,(2007) , 10.1111/J.1556-4029.2008.00595.X
Yi-Liang Wei, Cai-Xia Li, Jing Jia, Lan Hu, Yao Liu, Forensic identification using a multiplex assay of 47 SNPs. Journal of Forensic Sciences. ,vol. 57, pp. 1448- 1456 ,(2012) , 10.1111/J.1556-4029.2012.02154.X
Zhaoshu Zeng, Hongtao Yan, Li Wang, Enwu Yuan, Weihong Yang, Zhigang Liao, Ziming Dong, Genome-wide screen for individual identification SNPs (IISNPs) and the confirmation of six of them in Han Chinese with pyrosequencing technology Journal of Forensic Sciences. ,vol. 55, pp. 901- 907 ,(2010) , 10.1111/J.1556-4029.2010.01389.X
L.A. Dixon, C.M. Murray, E.J. Archer, A.E. Dobbins, P. Koumi, P. Gill, Validation of a 21-locus autosomal SNP multiplex for forensic identification purposes Forensic Science International. ,vol. 154, pp. 62- 77 ,(2005) , 10.1016/J.FORSCIINT.2004.12.011
Kenneth K. Kidd, Judith R. Kidd, William C. Speed, Rixun Fang, Manohar R. Furtado, F.C.L. Hyland, Andrew J. Pakstis, Expanding data and resources for forensic use of SNPs in individual identification Forensic Science International-genetics. ,vol. 6, pp. 646- 652 ,(2012) , 10.1016/J.FSIGEN.2012.02.012
B. Brinkmann, S. Rand, T. Bajanowski, Forensic identification of urine samples. International Journal of Legal Medicine. ,vol. 105, pp. 59- 61 ,(1992) , 10.1007/BF01371242
Chunguang Lou, Bin Cong, Shujin Li, Lihong Fu, Xiaojing Zhang, Ting Feng, Shanshan Su, Chunling Ma, Feng Yu, Jian Ye, Li Pei, A SNaPshot assay for genotyping 44 individual identification single nucleotide polymorphisms ELECTROPHORESIS. ,vol. 32, pp. 368- 378 ,(2011) , 10.1002/ELPS.201000426