Restriction enzyme based whole genome sequencing

作者: Michael Josephus Theresia Van Eijk , René Cornelis Josephus Hogers

DOI:

关键词:

摘要: Method for de novo whole genome sequencing based on a (sequence-based) physical map of DNA sample clone bank end-sequencing tagged adapter-ligated restriction fragments, in combination with fragments the wherein recognition sequence enzyme used generation is identical to at least part sample.

参考文章(41)
Vinod B. Makhijani, Gary J. Sarkis, John H. Leamon, Steven Lefkowitz, Maithreyan Srinivasan, Yi-Ju Chen, Kenton L. Lohman, Michael P. Weiner, Jan Berka, Jonathan M. Rothberg, Bead emulsion nucleic acid amplification ,(2004)
J. Craig Venter, Hamilton O. Smith, Leroy Hood, A new strategy for genome sequencing Nature. ,vol. 381, pp. 364- 366 ,(1996) , 10.1038/381364A0
Jean-Marc Aury, Corinne Cruaud, Valérie Barbe, Odile Rogier, Sophie Mangenot, Gaelle Samson, Julie Poulain, Véronique Anthouard, Claude Scarpelli, François Artiguenave, Patrick Wincker, High quality draft sequences for prokaryotic genomes using a mix of new sequencing technologies BMC Genomics. ,vol. 9, pp. 603- 603 ,(2008) , 10.1186/1471-2164-9-603
M. J. Fullwood, C.-L. Wei, E. T. Liu, Y. Ruan, Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses Genome Research. ,vol. 19, pp. 521- 532 ,(2009) , 10.1101/GR.074906.107
Rossa Wai Kwun Chiu, Kwan Chee Chan, Yuk-Ming Dennis Lo, Diagnosing fetal chromosomal aneuploidy using massively parallel genomic sequencing ,(2014)
Thomas R. Gingeras, Robert J. Lipshutz, Ronald J. Sapolsky, Capturing sequences adjacent to Type-IIs restriction sites for genomic library mapping ,(2008)
Shoulian San Jose Dong, J. Robert Palo Alto Lipshutz, J. David Del Mar Lockhart, Complexity management and analysis of genomic DNA ,(1999)
Marcel Margulies, Michael Egholm, William E Altman, Said Attiya, Joel S Bader, Lisa A Bemben, Jan Berka, Michael S Braverman, Yi-Ju Chen, Zhoutao Chen, Scott B Dewell, Lei Du, Joseph M Fierro, Xavier V Gomes, Brian C Godwin, Wen He, Scott Helgesen, Chun He Ho, Gerard P Irzyk, Szilveszter C Jando, Maria LI Alenquer, Thomas P Jarvie, Kshama B Jirage, Jong-Bum Kim, James R Knight, Janna R Lanza, John H Leamon, Steven M Lefkowitz, Ming Lei, Jing Li, Kenton L Lohman, Hong Lu, Vinod B Makhijani, Keith E McDade, Michael P McKenna, Eugene W Myers, Elizabeth Nickerson, John R Nobile, Ramona Plant, Bernard P Puc, Michael T Ronan, George T Roth, Gary J Sarkis, Jan Fredrik Simons, John W Simpson, Maithreyan Srinivasan, Karrie R Tartaro, Alexander Tomasz, Kari A Vogt, Greg A Volkmer, Shally H Wang, Yong Wang, Michael P Weiner, Pengguang Yu, Richard F Begley, Jonathan M Rothberg, None, Genome sequencing in microfabricated high-density picolitre reactors Nature. ,vol. 437, pp. 376- 380 ,(2005) , 10.1038/NATURE03959
Yijun Ruan, Hong Sain Ooi, Siew Woh Choo, Kuo Ping Chiu, Xiao Dong Zhao, KG Srinivasan, Fei Yao, Chiou Yu Choo, Jun Liu, Pramila Ariyaratne, Wilson GW Bin, Vladimir A Kuznetsov, Atif Shahab, Wing-Kin Sung, Guillaume Bourque, Nallasivam Palanisamy, Chia-Lin Wei, None, Fusion transcripts and transcribed retrotransposed loci discovered through comprehensive transcriptome analysis using Paired-End diTags (PETs) Genome Research. ,vol. 17, pp. 828- 838 ,(2007) , 10.1101/GR.6018607