Association analysis of colorectal cancer susceptibility variants with gastric cancer in a Chinese Han population.

作者: C.-P. Zhou , H.-Z. Pan , F.-X Li , N.-Y. Hu , M. Li

DOI: 10.4238/2014.MAY.9.10

关键词:

摘要: Evidence suggests that some genetic variants are risk factors for both colorectal cancer (CRC) and gastric (GC). Thus, we selected 12 reported single nucleotide polymorphisms (SNPs) from genome-wide association studies of CRC conducted this case-control study to assess the associations between these SNPs GC in a southern Chinese population. All were genotyped 249 individuals with 292 healthy population-matched subjects using Sequenom MassArray iPLEX System. Association analyses based on c2 test binary logistic regression performed determine odds ratio (OR) 95% confidence interval (95%CI) each SNP. A stratified analysis by gender was also performed. Borderline significant observed rs4444235 (P = 0.070) rs10411210 0.084), fitting overdominant model. The CT genotype showed protective effect (OR 0.72, 95%CI 0.50-1.03), while factor 1.40, 0.96-2.05) as compared CC+TT genotype. In female subgroup, rs6983267 GT (compared TT, OR 2.31, 1.07-4.99) rs10505477 2.36, 1.09-5.11) significantly increased GC. No detected other SNPs. These results provide evidence known associated may confer

参考文章(37)
Robbie Waugh, Bill Thomas, Andrew Flavell, Luke Ramsay, Jordi Comadran, Joanne Russell, Genome-Wide Association Scans (GWAS) Biotechnological Approaches to Barley Improvement. pp. 345- 365 ,(2014) , 10.1007/978-3-662-44406-1_18
Carlos A. González, Núria Sala, Gabriel Capellá, Genetic susceptibility and gastric cancer risk International Journal of Cancer. ,vol. 100, pp. 249- 260 ,(2002) , 10.1002/IJC.10466
Ian PM Tomlinson, Emily Webb, Luis Carvajal-Carmona, Peter Broderick, Kimberley Howarth, Alan M Pittman, Sarah Spain, Steven Lubbe, Axel Walther, Kate Sullivan, Emma Jaeger, Sarah Fielding, Andrew Rowan, Jayaram Vijayakrishnan, Enric Domingo, Ian Chandler, Zoe Kemp, Mobshra Qureshi, Susan M Farrington, Albert Tenesa, James GD Prendergast, Rebecca A Barnetson, Steven Penegar, Ella Barclay, Wendy Wood, Lynn Martin, Maggie Gorman, Huw Thomas, Julian Peto, D Timothy Bishop, Richard Gray, Eamonn R Maher, Anneke Lucassen, David Kerr, D Gareth R Evans, CORGI Consortium, Clemens Schafmayer, Stephan Buch, Henry Völzke, Jochen Hampe, Stefan Schreiber, Ulrich John, Thibaud Koessler, Paul Pharoah, Tom van Wezel, Hans Morreau, Juul T Wijnen, John L Hopper, Melissa C Southey, Graham G Giles, Gianluca Severi, Sergi Castellví-Bel, Clara Ruiz-Ponte, Angel Carracedo, Antoni Castells, EPICOLON Consortium, Asta Försti, Kari Hemminki, Pavel Vodicka, Alessio Naccarati, Lara Lipton, Judy WC Ho, KK Cheng, Pak C Sham, J Luk, Jose AG Agúndez, Jose M Ladero, Miguel de la Hoya, Trinidad Caldés, Iina Niittymäki, Sari Tuupanen, Auli Karhu, Lauri Aaltonen, Jean-Baptiste Cazier, Harry Campbell, Malcolm G Dunlop, Richard S Houlston, None, A genome-wide association study identifies colorectal cancer susceptibility loci on chromosomes 10p14 and 8q23.3 Nature Genetics. ,vol. 40, pp. 623- 630 ,(2008) , 10.1038/NG.111
Ryo Takata, Shusuke Akamatsu, Michiaki Kubo, Atsushi Takahashi, Naoya Hosono, Takahisa Kawaguchi, Tatsuhiko Tsunoda, Johji Inazawa, Naoyuki Kamatani, Osamu Ogawa, Tomoaki Fujioka, Yusuke Nakamura, Hidewaki Nakagawa, Genome-wide association study identifies five new susceptibility loci for prostate cancer in the Japanese population Nature Genetics. ,vol. 42, pp. 751- 754 ,(2010) , 10.1038/NG.635
Christian C Abnet, Neal D Freedman, Nan Hu, Zhaoming Wang, Kai Yu, Xiao-Ou Shu, Jian-Min Yuan, Wei Zheng, Sanford M Dawsey, Linda M Dong, Maxwell P Lee, Ti Ding, You-Lin Qiao, Yu-Tang Gao, Woon-Puay Koh, Yong-Bing Xiang, Ze-Zhong Tang, Jin-Hu Fan, Chaoyu Wang, William Wheeler, Mitchell H Gail, Meredith Yeager, Jeff Yuenger, Amy Hutchinson, Kevin B Jacobs, Carol A Giffen, Laurie Burdett, Joseph F Fraumeni, Margaret A Tucker, Wong-Ho Chow, Alisa M Goldstein, Stephen J Chanock, Philip R Taylor, A shared susceptibility locus in PLCE1 at 10q23 for gastric adenocarcinoma and esophageal squamous cell carcinoma Nature Genetics. ,vol. 42, pp. 764- 767 ,(2010) , 10.1038/NG.649
Ian Tomlinson, Emily Webb, Luis Carvajal-Carmona, Peter Broderick, Zoe Kemp, Sarah Spain, Steven Penegar, Ian Chandler, Maggie Gorman, Wendy Wood, Ella Barclay, Steven Lubbe, Lynn Martin, Gabrielle Sellick, Emma Jaeger, Richard Hubner, Ruth Wild, Andrew Rowan, Sarah Fielding, Kimberley Howarth, CORGI Consortium, Andrew Silver, Wendy Atkin, Kenneth Muir, Richard Logan, David Kerr, Elaine Johnstone, Oliver Sieber, Richard Gray, Huw Thomas, Julian Peto, Jean-Baptiste Cazier, Richard Houlston, None, A genome-wide association scan of tag SNPs identifies a susceptibility variant for colorectal cancer at 8q24.21. Nature Genetics. ,vol. 39, pp. 984- 988 ,(2007) , 10.1038/NG2085
Douglas F Easton, Karen A Pooley, Alison M Dunning, Paul DP Pharoah, Deborah Thompson, Dennis G Ballinger, Jeffery P Struewing, Jonathan Morrison, Helen Field, Robert Luben, Nicholas Wareham, Shahana Ahmed, Catherine S Healey, Richard Bowman, SEARCH collaborators Luccarini Craig 61 Conroy Don 61 Shah Mitul 61 Munday Hannah 61 Jordan Clare 61 Perkins Barbara 61 West Judy 61 Redman Karen 61 Driver Kristy 61, Kerstin B Meyer, Christopher A Haiman, Laurence K Kolonel, Brian E Henderson, Loic Le Marchand, Paul Brennan, Suleeporn Sangrajrang, Valerie Gaborieau, Fabrice Odefrey, Chen-Yang Shen, Pei-Ei Wu, Hui-Chun Wang, Diana Eccles, D Gareth Evans, Julian Peto, Olivia Fletcher, Nichola Johnson, Sheila Seal, Michael R Stratton, Nazneen Rahman, Georgia Chenevix-Trench, Stig E Bojesen, Børge G Nordestgaard, Christen K Axelsson, Montserrat Garcia-Closas, Louise Brinton, Stephen Chanock, Jolanta Lissowska, Beata Peplonska, Heli Nevanlinna, Rainer Fagerholm, Hannaleena Eerola, Daehee Kang, Keun-Young Yoo, Dong-Young Noh, Sei-Hyun Ahn, David J Hunter, Susan E Hankinson, David G Cox, Per Hall, Sara Wedren, Jianjun Liu, Yen-Ling Low, Natalia Bogdanova, Peter Schürmann, Thilo Dörk, Rob AEM Tollenaar, Catharina E Jacobi, Peter Devilee, Jan GM Klijn, Alice J Sigurdson, Michele M Doody, Bruce H Alexander, Jinghui Zhang, Angela Cox, Ian W Brock, Gordon MacPherson, Malcolm WR Reed, Fergus J Couch, Ellen L Goode, Janet E Olson, Hanne Meijers-Heijboer, Ans van den Ouweland, André Uitterlinden, Fernando Rivadeneira, Roger L Milne, Gloria Ribas, Anna Gonzalez-Neira, Javier Benitez, John L Hopper, Margaret McCredie, Melissa Southey, Graham G Giles, Chris Schroen, Christina Justenhoven, Hiltrud Brauch, Ute Hamann, Yon-Dschun Ko, Amanda B Spurdle, Jonathan Beesley, Xiaoqing Chen, AOCS Management Group Bowtell David 146 Green Adele 82 deFazio Anna 147 Chenevix-Trench Georgia 82 Gertig Dorota 111 Webb Penny 82, Arto Mannermaa, Veli-Matti Kosma, Vesa Kataja, Jaana Hartikainen, Nicholas E Day, David R Cox, Bruce AJ Ponder, None, Genome-wide association study identifies novel breast cancer susceptibility loci Nature. ,vol. 447, pp. 1087- 1093 ,(2007) , 10.1038/NATURE05887
Fen-Xia Li, Xue-Xi Yang, Xuan-Qiu He, Ni-Ya Hu, Ying-Song Wu, Ming Li, Association of 10q23 with colorectal cancer in a Chinese population Molecular Biology Reports. ,vol. 39, pp. 9557- 9562 ,(2012) , 10.1007/S11033-012-1820-8
Paul Lochhead, Michael T.H. Ng, Georgina L. Hold, Charles S. Rabkin, Thomas L. Vaughan, Marilie D. Gammon, Harvey A. Risch, Jolanta Lissowska, Indrani Mukhopadhya, Wong-Ho Chow, Emad M. El-Omar, Possible association between a genetic polymorphism at 8q24 and risk of upper gastrointestinal cancer. European Journal of Cancer Prevention. ,vol. 20, pp. 54- 57 ,(2011) , 10.1097/CEJ.0B013E328341E320
Mark M Pomerantz, Nasim Ahmadiyeh, LI Jia, Paula Herman, Michael P Verzi, Harshavardhan Doddapaneni, Christine A Beckwith, Jennifer A Chan, Adam Hills, Matt Davis, Keluo Yao, Sarah M Kehoe, Heinz-Josef Lenz, Christopher A Haiman, Chunli Yan, Brian E Henderson, Baruch Frenkel, Jordi Barretina, Adam Bass, Josep Tabernero, José Baselga, Meredith M Regan, J Robert Manak, Ramesh Shivdasani, Gerhard A Coetzee, Matthew L Freedman, None, The 8q24 cancer risk variant rs6983267 shows long-range interaction with MYC in colorectal cancer. Nature Genetics. ,vol. 41, pp. 882- 884 ,(2009) , 10.1038/NG.403