Game-Theoretical Modeling of Interviral Conflicts Mediated by Mini-CRISPR Arrays.

作者: Jaime Iranzo , Guilhem Faure , Yuri I. Wolf , Eugene V. Koonin

DOI: 10.3389/FMICB.2020.00381

关键词:

摘要: All cellular organisms coevolve with multiple viruses, so that both virus-host and intervirus conflicts are major factors of evolution. Accordingly, hosts evolve multiple, elaborate defense systems viruses respond by evolving means antidefense. Although less thoroughly characterized, several dedicated mechanisms competition have been described as well. Recently, the genomes some bacterial archaeal shown to harbor CRISPR mini-arrays typically contain a single spacer targeting closely related virus. The involvement in an conflict has experimentally demonstrated for pair viruses. We model evolution virus-encoded using game theoretical approach. Analysis reveals equilibria include mutual targeting, unidirectional no cyclic polymorphism, bistability. choice between these evolutionary regimes depends on parameters including coinfection frequency, differential productivity conflicting fitness cost mini-arrays. At high frequencies, becomes version Prisoner's dilemma which defection, i.e., competing is winning strategy.

参考文章(48)
Coinfection and the evolution of parasite virulence. Proceedings of The Royal Society B: Biological Sciences. ,vol. 261, pp. 209- 215 ,(1994) , 10.1098/RSPB.1994.0012
Forest Rohwer, David Prangishvili, Debbie Lindell, Roles of viruses in the environment. Environmental Microbiology. ,vol. 11, pp. 2771- 2774 ,(2009) , 10.1111/J.1462-2920.2009.02101.X
Meng-Ji Lu, Ulf Henning, Superinfection exclusion by T-even-type coliphages Trends in Microbiology. ,vol. 2, pp. 137- 139 ,(1994) , 10.1016/0966-842X(94)90601-7
J. Iranzo, A. E. Lobkovsky, Y. I. Wolf, E. V. Koonin, Evolutionary Dynamics of the Prokaryotic Adaptive Immunity System CRISPR-Cas in an Explicit Ecological Context Journal of Bacteriology. ,vol. 195, pp. 3834- 3844 ,(2013) , 10.1128/JB.00412-13
Paul E. Turner, Lin Chao, Escape from Prisoner’s Dilemma in RNA Phage Φ6 The American Naturalist. ,vol. 161, pp. 497- 505 ,(2003) , 10.1086/367880
S. Heilmann, K. Sneppen, S. Krishna, Coexistence of phage and bacteria on the boundary of self-organized refuges Proceedings of the National Academy of Sciences of the United States of America. ,vol. 109, pp. 12828- 12833 ,(2012) , 10.1073/PNAS.1200771109
Jaime Iranzo, Alexander E Lobkovsky, Yuri I Wolf, Eugene V Koonin, Immunity, suicide or both? Ecological determinants for the combined evolution of anti-pathogen defense systems BMC Evolutionary Biology. ,vol. 15, pp. 43- 43 ,(2015) , 10.1186/S12862-015-0324-2
Susanne Erdmann, Sven Le Moine Bauer, Roger A. Garrett, Inter‐viral conflicts that exploit host CRISPR immune systems of Sulfolobus Molecular Microbiology. ,vol. 91, pp. 900- 917 ,(2014) , 10.1111/MMI.12503