Functional Genomics of Methanogens

Raymond Hovey, Sabine Lentes, Armin Ehrenreich, Kirsty Salmon, Karla Saba, Gerhard Gottschalk, Robert P. Gunsalus, Uwe Deppenmeier, DNA microarray analysis of Methanosarcina mazei Gö1 reveals adaptation to different methanogenic substrates Molecular Genetics and Genomics. ,vol. 273, pp. 225- 239 ,(2005) , 10.1007/S00438-005-1126-9

Qiangwei Xia, Erik L. Hendrickson, Tiansong Wang, Richard J. Lamont, John A. Leigh, Murray Hackett, Protein abundance ratios for global studies of prokaryotes Proteomics. ,vol. 7, pp. 2904- 2919 ,(2007) , 10.1002/PMIC.200700267

Amber Goodchild, Mark Raftery, Neil F. W. Saunders, Michael Guilhaus, Ricardo Cavicchioli, Biology of the cold adapted archaeon, Methanococcoides burtonii determined by proteomics using liquid chromatography-tandem mass spectrometry. Journal of Proteome Research. ,vol. 3, pp. 1164- 1176 ,(2004) , 10.1021/PR0498988

D. J. Lessner, L. Li, Q. Li, T. Rejtar, V. P. Andreev, M. Reichlen, K. Hill, J. J. Moran, B. L. Karger, J. G. Ferry, An unconventional pathway for reduction of CO2 to methane in CO-grown Methanosarcina acetivorans revealed by proteomics Proceedings of the National Academy of Sciences of the United States of America. ,vol. 103, pp. 17921- 17926 ,(2006) , 10.1073/PNAS.0608833103

Katharina Pflüger, Armin Ehrenreich, Kirsty Salmon, Robert P. Gunsalus, Uwe Deppenmeier, Gerhard Gottschalk, Volker Müller, Identification of genes involved in salt adaptation in the archaeon Methanosarcina mazei Gö1 using genome-wide gene expression profiling. Fems Microbiology Letters. ,vol. 277, pp. 79- 89 ,(2007) , 10.1111/J.1574-6968.2007.00941.X

A. I. Slesarev, K. V. Mezhevaya, K. S. Makarova, N. N. Polushin, O. V. Shcherbinina, V. V. Shakhova, G. I. Belova, L. Aravind, D. A. Natale, I. B. Rogozin, R. L. Tatusov, Y. I. Wolf, K. O. Stetter, A. G. Malykh, E. V. Koonin, S. A. Kozyavkin, The complete genome of hyperthermophile Methanopyrus kandleri AV19 and monophyly of archaeal methanogens Proceedings of the National Academy of Sciences of the United States of America. ,vol. 99, pp. 4644- 4649 ,(2002) , 10.1073/PNAS.032671499

Yuchen Liu, William B Whitman, None, Metabolic, phylogenetic, and ecological diversity of the methanogenic archaea. Annals of the New York Academy of Sciences. ,vol. 1125, pp. 171- 189 ,(2008) , 10.1196/ANNALS.1419.019

Iris Porat, Wonduck Kim, Erik L Hendrickson, Qiangwei Xia, Yi Zhang, Tiansong Wang, Fred Taub, Brian C Moore, Iain J Anderson, Murray Hackett, John A Leigh, William B Whitman, None, Disruption of the Operon Encoding Ehb Hydrogenase Limits Anabolic CO2 Assimilation in the Archaeon Methanococcus maripaludis Journal of Bacteriology. ,vol. 188, pp. 1373- 1380 ,(2006) , 10.1128/JB.188.4.1373-1380.2006

Lingyun Li, Qingbo Li, Lars Rohlin, UnMi Kim, Kirsty Salmon, Tomas Rejtar, Robert P. Gunsalus, Barry L. Karger, James G. Ferry, Quantitative proteomic and microarray analysis of the archaeon Methanosarcina acetivorans grown with acetate versus methanol. Journal of Proteome Research. ,vol. 6, pp. 759- 771 ,(2007) , 10.1021/PR060383L

Erik L Hendrickson, Andrew K Haydock, Brian C Moore, William B Whitman, John A Leigh, None, Functionally distinct genes regulated by hydrogen limitation and growth rate in methanogenic Archaea Proceedings of the National Academy of Sciences of the United States of America. ,vol. 104, pp. 8930- 8934 ,(2007) , 10.1073/PNAS.0701157104