Chromatin topology, condensates and gene regulation: shifting paradigms or just a phase?

作者: Mustafa Mir , Wendy Bickmore , Eileen E. M. Furlong , Geeta Narlikar

DOI: 10.1242/DEV.182766

关键词:

摘要: In the past decade, two major advances in our understanding of nuclear organization have taken field gene regulation by storm. First, technologies that can analyze three-dimensional conformation chromatin revealed how genome is organized and provided novel insights into regulatory regions interact. Second, recognition many proteins form membraneless compartments through liquid-liquid phase separation (LLPS) has challenged long-standing notions within nucleus are offered a tantalizing general mechanism which aspects function may be regulated. However, functional roles topology LLPS regulating expression remain poorly understood. These topics were discussed with great fervor during an open discussion held at recent workshop titled 'Chromatin-based development' The Company Biologists. Here, we summarize points covered this debate discuss they tie current thinking regulation.

参考文章(58)
Takashi Nagano, Yaniv Lubling, Tim J Stevens, Stefan Schoenfelder, Eitan Yaffe, Wendy Dean, Ernest D Laue, Amos Tanay, Peter Fraser, None, Single-cell Hi-C reveals cell-to-cell variability in chromosome structure Nature. ,vol. 502, pp. 59- 64 ,(2013) , 10.1038/NATURE12593
Frédéric Bantignies, Virginie Roure, Itys Comet, Benjamin Leblanc, Bernd Schuettengruber, Jérôme Bonnet, Vanessa Tixier, André Mas, Giacomo Cavalli, Polycomb-dependent Regulatory Contacts Between Distant Hox Loci in Drosophila Cell. ,vol. 144, pp. 214- 226 ,(2011) , 10.1016/J.CELL.2010.12.026
Suhas SP Rao, Miriam H Huntley, Neva C Durand, Elena K Stamenova, Ivan D Bochkov, James T Robinson, Adrian L Sanborn, Ido Machol, Arina D Omer, Eric S Lander, Erez Lieberman Aiden, None, A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping Cell. ,vol. 159, pp. 1665- 1680 ,(2014) , 10.1016/J.CELL.2014.11.021
C. P. Brangwynne, T. J. Mitchison, A. A. Hyman, Active liquid-like behavior of nucleoli determines their size and shape in Xenopus laevis oocytes. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 108, pp. 4334- 4339 ,(2011) , 10.1073/PNAS.1017150108
Florian Mueller, Davide Mazza, Timothy J Stasevich, James G McNally, FRAP and kinetic modeling in the analysis of nuclear protein dynamics: what do we really know? Current Opinion in Cell Biology. ,vol. 22, pp. 403- 411 ,(2010) , 10.1016/J.CEB.2010.03.002
C. P. Brangwynne, C. R. Eckmann, D. S. Courson, A. Rybarska, C. Hoege, J. Gharakhani, F. Julicher, A. A. Hyman, Germline P Granules Are Liquid Droplets That Localize by Controlled Dissolution/Condensation Science. ,vol. 324, pp. 1729- 1732 ,(2009) , 10.1126/SCIENCE.1172046
Tom Sexton, Eitan Yaffe, Ephraim Kenigsberg, Frédéric Bantignies, Benjamin Leblanc, Michael Hoichman, Hugues Parrinello, Amos Tanay, Giacomo Cavalli, None, Three-Dimensional Folding and Functional Organization Principles of the Drosophila Genome Cell. ,vol. 148, pp. 458- 472 ,(2012) , 10.1016/J.CELL.2012.01.010
Brian L. Sprague, Florian Müller, Robert L. Pego, Peter M. Bungay, Diana A. Stavreva, James G. McNally, Analysis of Binding at a Single Spatially Localized Cluster of Binding Sites by Fluorescence Recovery after Photobleaching Biophysical Journal. ,vol. 91, pp. 1169- 1191 ,(2006) , 10.1529/BIOPHYSJ.105.073676
E. B. Wilson, THE STRUCTURE OF PROTOPLASM Science. ,vol. 10, pp. 33- 45 ,(1899) , 10.1126/SCIENCE.10.237.33