Draft whole-genome sequence of the Diaporthe helianthi 7/96 strain, causal agent of sunflower stem canker.
作者： Riccardo Baroncelli , Felice Scala , Mariarosaira Vergara , Michael R. Thon , Michelina Ruocco
DOI: 10.1016/J.GDATA.2016.11.005
关键词:
摘要: Diaporthe helianthi is a fungus pathogenic to sunflower. Virulent strains of this cause stem canker with important yield losses and reduction oil content. Here we present the first draft whole-genome sequence highly virulent isolate D. strain 7/96, thus providing useful platform for future research on sunflower fungal genomics. The genome 7/96 was deposited at DDBJ/ENA/GenBank under accession number MAVT00000000 (BioProject PRJNA327798).
core.ac.uk
sci-hub.se 参考文章(12)
M. Petrov, M. Mihaljcevic, M. Muntanola-Cvetkovic, On the identity of the causative agent of a serious Phomopsis-Diaporthe disease in sunflower plants. Nova Hedwigia. ,vol. 34, pp. 417- 435 ,(1981)
Abraham Morales-Cruz, Katherine C. H. Amrine, Barbara Blanco-Ulate, Daniel P. Lawrence, Renaud Travadon, Philippe E. Rolshausen, Kendra Baumgartner, Dario Cantu, Distinctive expansion of gene families associated with plant cell wall degradation, secondary metabolism, and nutrient uptake in the genomes of grapevine trunk pathogens BMC Genomics. ,vol. 16, pp. 469- 469 ,(2015) , 10.1186/S12864-015-1624-Z
Ralph A Dean, Nicholas J Talbot, Daniel J Ebbole, Mark L Farman, Thomas K Mitchell, Marc J Orbach, Michael Thon, Resham Kulkarni, Jin-Rong Xu, Huaqin Pan, Nick D Read, Yong-Hwan Lee, Ignazio Carbone, Doug Brown, Yeon Yee Oh, Nicole Donofrio, Jun Seop Jeong, Darren M Soanes, Slavica Djonovic, Elena Kolomiets, Cathryn Rehmeyer, Weixi Li, Michael Harding, Soonok Kim, Marc-Henri Lebrun, Heidi Bohnert, Sean Coughlan, Jonathan Butler, Sarah Calvo, Li-Jun Ma, Robert Nicol, Seth Purcell, Chad Nusbaum, James E Galagan, Bruce W Birren, None, The genome sequence of the rice blast fungus Magnaporthe grisea Nature. ,vol. 434, pp. 980- 986 ,(2005) , 10.1038/NATURE03449
Thomas Nordahl Petersen, Søren Brunak, Gunnar von Heijne, Henrik Nielsen, SignalP 4.0: discriminating signal peptides from transmembrane regions Nature Methods. ,vol. 8, pp. 785- 786 ,(2011) , 10.1038/NMETH.1701
Carson Holt, Mark Yandell, MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects. BMC Bioinformatics. ,vol. 12, pp. 491- 491 ,(2011) , 10.1186/1471-2105-12-491
Mariarosaria Vergara, Caterina Cristani, Cristina Regis, Giovanni Vannacci, A coding region in Diaporthe helianthi reveals genetic variability among isolates of different geographic origin. Mycopathologia. ,vol. 158, pp. 123- 130 ,(2004) , 10.1023/B:MYCO.0000038448.60051.6B
R. Baroncelli, J. M. Sanz-Martin, G. E. Rech, S. A. Sukno, M. R. Thon, Draft Genome Sequence of Colletotrichum sublineola, a Destructive Pathogen of Cultivated Sorghum. Genome Announcements. ,vol. 2, ,(2014) , 10.1128/GENOMEA.00540-14
Felipe A. Simão, Robert M. Waterhouse, Panagiotis Ioannidis, Evgenia V. Kriventseva, Evgeny M. Zdobnov, BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs Bioinformatics. ,vol. 31, pp. 3210- 3212 ,(2015) , 10.1093/BIOINFORMATICS/BTV351
D. R. Zerbino, E. Birney, Velvet: Algorithms for de novo short read assembly using de Bruijn graphs Genome Research. ,vol. 18, pp. 821- 829 ,(2008) , 10.1101/GR.074492.107
Jonathan Butler, Matthew Endrizzi, Dayong Qui, Peter Ianakiev, Deborah Bell-Pedersen, Mary Anne Nelson, Margaret Werner-Washburne, Claude P Selitrennikoff, John A Kinsey, Edward L Braun, Svetlana Krystofova, Carolyn Rasmussen, Robert L Metzenberg, David D Perkins, Scott Kroken, Sarah E Calvo, James E Galagan, Katherine A Borkovich, Eric U Selker, David Jaffe, William FitzHugh, Li-Jun Ma, Serge Smirnov, Seth Purcell, Bushra Rehman, Timothy Elkins, Reinhard Engels, Shunguang Wang, Cydney B Nielsen, Alex Zelter, Ulrich Schulte, Gregory O Kothe, Gregory Jedd, Nick D Read, Werner Mewes, Chuck Staben, Edward Marcotte, David Greenberg, Alice Roy, Karen Foley, Jerome R Naylor, Nicole Stange-Thomann, Robert Barrett, Michael Kamal, Manolis Kamvysselis, Evan Mauceli, Cord Bielke, Stephen Rudd, Dmitrij Frishman, Carlo Cogoni, Giuseppe Macino, Sante Gnerre, David Edward Catcheside, Weixi Li, Robert J Pratt, Stephen A Osmani, Colin PC DeSouza, Louise Glass, J Andrew Berglund, Rodger Voelker, Oded Yarden, Michael Plamann, Stephan Seiler, Jay C Dunlap, Marc J Orbach, Alan Radford, Rodolfo Aramayo, Donald O Natvig, Lisa A Alex, Gertrud Mannhaupt, Michael Freitag, Ian T Paulsen, Matthew S Sachs, Eric S Lander, Chad Nusbaum, Bruce Birren, Daniel J Ebbole, None, The genome sequence of the filamentous fungus Neurospora crassa Nature. ,vol. 422, pp. 859- 868 ,(2003) , 10.1038/NATURE01554