The Built Environment Is a Microbial Wasteland.

作者: Sean M. Gibbons

DOI: 10.1128/MSYSTEMS.00033-16

关键词:

摘要: ABSTRACT Humanity’s transition from the outdoor environment to built (BE) has reduced our exposure microbial diversity. The relative importance of factors that contribute composition human-dominated BE communities remains largely unknown. In their article in this issue, Chase and colleagues (J. Chase, J. Fouquier, M. Zare, D. L. Sonderegger, R. Knight, S. T. Kelley, Siegel, G. Caporaso, mSystems 1(2):e00022-16, 2016, http://dx.doi.org/10.1128/mSystems.00022-16 ) present an office building study which they controlled for environmental factors, geography, surface material, sampling location, human interaction type. They found location geography were strongest contributing community structure, while material had little effect. Even absence direct interaction, surfaces composed 25 30% skin-associated taxa. authors demonstrate how technical variation across sequencing runs is a major especially work, where biomass often low potential PCR contaminants high. Overall, conclude are desert-like environments microbes passively accumulate.

参考文章(23)
H. Okada, C. Kuhn, H. Feillet, J.-F. Bach, The ‘hygiene hypothesis’ for autoimmune and allergic diseases: an update Clinical and Experimental Immunology. ,vol. 160, pp. 1- 9 ,(2010) , 10.1111/J.1365-2249.2010.04139.X
James F. Meadow, Adam E. Altrichter, Ashley C. Bateman, Jason Stenson, GZ Brown, Jessica L. Green, Brendan J.M. Bohannan, Humans differ in their personal microbial cloud PeerJ. ,vol. 3, ,(2015) , 10.7717/PEERJ.1258
Sepideh Pakpour, De-Wei Li, John Klironomos, Relationships of fungal spore concentrations in the air and meteorological factors Fungal Ecology. ,vol. 13, pp. 130- 134 ,(2015) , 10.1016/J.FUNECO.2014.09.008
S. Lax, D. P. Smith, J. Hampton-Marcell, S. M. Owens, K. M. Handley, N. M. Scott, S. M. Gibbons, P. Larsen, B. D. Shogan, S. Weiss, J. L. Metcalf, L. K. Ursell, Y. Vazquez-Baeza, W. Van Treuren, N. A. Hasan, M. K. Gibson, R. Colwell, G. Dantas, R. Knight, J. A. Gilbert, Longitudinal analysis of microbial interaction between humans and the indoor environment. Science. ,vol. 345, pp. 1048- 1052 ,(2014) , 10.1126/SCIENCE.1254529
Krissi M. Hewitt, Charles P. Gerba, Sheri L. Maxwell, Scott T. Kelley, Office space bacterial abundance and diversity in three metropolitan areas. PLOS ONE. ,vol. 7, pp. 37849- 37849 ,(2012) , 10.1371/JOURNAL.PONE.0037849
Nancy A Moran, Paul Baumann, Bacterial endosymbionts in animals. Current Opinion in Microbiology. ,vol. 3, pp. 270- 275 ,(2000) , 10.1016/S1369-5274(00)00088-6
Martin Lauss, Ilhami Visne, Albert Kriegner, Markus Ringnér, Göran Jönsson, Mattias Höglund, Monitoring of technical variation in quantitative high-throughput datasets. Cancer Informatics. ,vol. 12, pp. 193- 201 ,(2013) , 10.4137/CIN.S12862
Ruth E. Ley, Peter J. Turnbaugh, Samuel Klein, Jeffrey I. Gordon, Microbial ecology: Human gut microbes associated with obesity Nature. ,vol. 444, pp. 1022- 1023 ,(2006) , 10.1038/4441022A
Scott T Kelley, Jack A Gilbert, Studying the microbiology of the indoor environment. Genome Biology. ,vol. 14, pp. 202- 202 ,(2013) , 10.1186/GB-2013-14-2-202
Jarrad T Hampton-Marcell, Sean M Gibbons, Geórgia Barguil Colares, Daniel Smith, Jonathan A Eisen, Jack A Gilbert, Simon Lax, Forensic analysis of the microbiome of phones and shoes Microbiome. ,vol. 3, pp. 21- 21 ,(2015) , 10.1186/S40168-015-0082-9