The challenge of identifying tuberculosis proteins in archaeological tissues

作者: Jessica Hendy , Matthew Collins , Kai Yik Teoh , David A. Ashford , Jane Thomas-Oates

DOI: 10.1016/J.JAS.2016.01.003

关键词:

摘要: Following the report of Mycobacterium tuberculosis proteins found in archaeological bone by Boros-Major et al. (2011), we attempted to identify M. tuberculosis mummified lung tissues from which ancient DNA success had already been reported. Using a filter-aided sample preparation protocol modified for samples applied shotgun proteomics seven lung, chest and pleura tissues. However, only identified four peptides with unique matches complex, none were M. tuberculosis, although did range human non-mycobacterial bacterial proteins. In light these results, question validity peptide mass fingerprint (PMF) approach presented especially because PMF spectrum (2011) has similarities that collagen, dominant protein tissue under investigation. We explore challenges using proteomic approaches detect propose that, given contentious outcomes have plagued research past, susceptibility material modern contamination, degradation inherent samples, caution is needed acquisition, analysis reporting data such material.

参考文章(52)
Joël Vandekerckhove, Kris Gevaert, Gel-free proteomics : methods and protocols Humana Press. ,(2011)
Anita Boros-Major, Agnes Bona, Gabriella Lovasz, Erika Molnar, Antonia Marcsik, Gyorgy Palfi, Laszlo Mark, New perspectives in biomolecular paleopathology of ancient tuberculosis: a proteomic approach Journal of Archaeological Science. ,vol. 38, pp. 197- 201 ,(2011) , 10.1016/J.JAS.2010.09.008
Mike Buckley, Nienke van Doorn, Matthew J. Collins, Kristine K. Richter, Julie Wilson, Andrew K.G. Jones, Fish ?n chips: ZooMS peptide mass fingerprinting in a 96 well plate format to identify fish bone fragments. Journal of Archaeological Science. ,vol. 38, pp. 1502- 1510 ,(2011) , 10.1016/J.JAS.2011.02.014
Angelique Corthals, Antonius Koller, Dwight W. Martin, Robert Rieger, Emily I. Chen, Mario Bernaski, Gabriella Recagno, Liliana M. Dávalos, Detecting the Immune System Response of a 500 Year-Old Inca Mummy PLoS ONE. ,vol. 7, pp. e41244- ,(2012) , 10.1371/JOURNAL.PONE.0041244
Frido Welker, Marie Soressi, William Rendu, Jean-Jacques Hublin, Matthew Collins, Using ZooMS to identify fragmentary bone from the Late Middle/Early Upper Palaeolithic sequence of Les Cottés, France Journal of Archaeological Science. ,vol. 54, pp. 279- 286 ,(2015) , 10.1016/J.JAS.2014.12.010
A. S. Bouwman, S. L. Kennedy, R. Muller, R. H. Stephens, M. Holst, A. C. Caffell, C. A. Roberts, T. A. Brown, Genotype of a historic strain of Mycobacterium tuberculosis Proceedings of the National Academy of Sciences of the United States of America. ,vol. 109, pp. 18511- 18516 ,(2012) , 10.1073/PNAS.1209444109
Laszlo Mark, Gergely Gulyas-Fekete, Antonia Marcsik, Erika Molnar, Gyorgy Palfi, Analysis of ancient mycolic acids by using MALDI TOF MS: response to “Essentials in the use of mycolic acid biomarkers for tuberculosis detection” by Minnikin et al., 2010 Journal of Archaeological Science. ,vol. 38, pp. 1111- 1118 ,(2011) , 10.1016/J.JAS.2010.11.027
R. W. G. Wyckoff, E. Wagner, P. Matter, A. R. Doberenz, COLLAGEN IN FOSSIL BONE. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 50, pp. 215- 218 ,(1963) , 10.1073/PNAS.50.2.215