The effect of chemical modification of DNA base on binding of HgII and AgI in metal-mediated base pairs
作者： Jakub Šebera , Yoshiyuki Tanaka , Akira Ono , Vladimír Sychrovský
DOI: 10.1016/J.ICA.2016.03.007
关键词:
摘要: Abstract The Gibbs free energy of formation metallo-base pair was calculated for the base pairs composed T, U, F, CN, C and I nucleosides Hg II Ag metals. effect particular metal pH on relative stabilization were studied with energies. stability Hg-mediated gradually decreased owing to F CN chemical modification thymine at carbon C5 imino imidazole change N3 nitrogen atom linked . prevalence -stabilization versus where nucleophilicity decreased. stabilizations agreed qualitatively increase in melting temperatures measured previously respective duplexes upon adding metals (Okamoto et al., 2009). absolute magnitude 1 J (Hg,N) 2 (N,N) coupling constants across metal-mediated linkage increased T further magnitudes -couplings metal-bound nitrogen.
sci-hub.se 参考文章(38)
Dominik A. Megger, Nicole Megger, Jens Müller, Metal-mediated base pairs in nucleic acids with purine- and pyrimidine-derived nucleosides. Metal ions in life sciences. ,vol. 10, pp. 295- 317 ,(2012) , 10.1007/978-94-007-2172-2_11
Yoshiyuki Tanaka, Jiro Kondo, Vladimír Sychrovský, Jakub Šebera, Takenori Dairaku, Hisao Saneyoshi, Hidehito Urata, Hidetaka Torigoe, Akira Ono, Structures, physicochemical properties, and applications of T–HgII–T, C–AgI–C, and other metallo-base-pairs Chemical Communications. ,vol. 51, pp. 17343- 17360 ,(2015) , 10.1039/C5CC02693H
Pekka Pyykkö, Strong Closed-Shell Interactions in Inorganic Chemistry. Chemical Reviews. ,vol. 97, pp. 597- 636 ,(1997) , 10.1021/CR940396V
Hidetaka Torigoe, Yukako Miyakawa, Akira Ono, Tetsuo Kozasa, Positive cooperativity of the specific binding between Hg2+ ion and T:T mismatched base pairs in duplex DNA Thermochimica Acta. ,vol. 532, pp. 28- 35 ,(2012) , 10.1016/J.TCA.2011.03.018
Christophe Morell, André Grand, Alejandro Toro-Labbé, New Dual Descriptor for Chemical Reactivity Journal of Physical Chemistry A. ,vol. 109, pp. 205- 212 ,(2005) , 10.1021/JP046577A
Alexander A. Voityuk, Electronic coupling mediated by stacked [Thymine-Hg-Thymine] base pairs. Journal of Physical Chemistry B. ,vol. 110, pp. 21010- 21013 ,(2006) , 10.1021/JP062776D
Jacopo Tomasi, Benedetta Mennucci, Roberto Cammi, Quantum Mechanical Continuum Solvation Models Chemical Reviews. ,vol. 105, pp. 2999- 3094 ,(2005) , 10.1021/CR9904009
Hidetaka Torigoe, Akira Ono, Tetsuo Kozasa, HgII Ion Specifically Binds with T:T Mismatched Base Pair in Duplex DNA Chemistry: A European Journal. ,vol. 16, pp. 13218- 13225 ,(2010) , 10.1002/CHEM.201001171
Tiziana Marino, Nino Russo, Marirosa Toscano, Matej Pavelka, Theoretical investigation on DNA/RNA base pairs mediated by copper, silver, and gold cations Dalton Transactions. ,vol. 41, pp. 1816- 1823 ,(2012) , 10.1039/C1DT11028D
Irena Kratochvílová, Martin Golan, Martin Vala, Miroslava Špérová, Martin Weiter, Ondřej Páv, Jakub Šebera, Ivan Rosenberg, Vladimír Sychrovský, Yoshiyuki Tanaka, F. Matthias Bickelhaupt, Theoretical and experimental study of charge transfer through DNA: impact of mercury mediated T-Hg-T base pair. Journal of Physical Chemistry B. ,vol. 118, pp. 5374- 5381 ,(2014) , 10.1021/JP501986A