Trans-ethnic genome-wide meta-analysis of 35,732 cases and 34,424 controls identifies novel genomic cross-ancestry loci contributing to lung cancer susceptibility

作者: Jinyoung Byun , Younghun Han , Yafang Li , Jun Xia , Xiangjun Xiao

DOI: 10.1101/2020.10.06.20207753

关键词:

摘要: Lung cancer is the leading cause of death worldwide. Genome-wide association studies have revealed genetic risk factors, highlighting role smoking, family history, telomere regulation, and DNA damage-repair in lung etiology. Many focused on a single ethnic group to avoid confounding from variability allele frequencies across populations; however, comprehensive multi-ethnic analyses may identify variants that are more likely be causal. This large-scale, meta-analyses identified 28 novel loci achieving genome-wide significance. Leading candidates were further studied using single-cell methods for evaluating DNA-damage. DNA-damage promoting activities confirmed selected genes by knockdown overexpression studies.

参考文章(99)
Mi-Young Son, Hoonsung Choi, Yong-Mahn Han, Yee Sook Cho, Unveiling the critical role of REX1 in the regulation of human stem cell pluripotency. Stem Cells. ,vol. 31, pp. 2374- 2387 ,(2013) , 10.1002/STEM.1509
Yataro Daigo, Toyomasa Katagiri, Yusuke Nakamura, Chie Suzuki, Takefumi Kikuchi, Identification of COX17 as a therapeutic target for non-small cell lung cancer Cancer Research. ,vol. 63, pp. 7038- 7041 ,(2003)
Sungshim L Park, Steven G Carmella, Menglan Chen, Yesha Patel, Daniel O Stram, Christopher A Haiman, Loic Le Marchand, Stephen S Hecht, None, Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer PLOS ONE. ,vol. 10, pp. e0124841- ,(2015) , 10.1371/JOURNAL.PONE.0124841
Maria Teresa Landi, Nilanjan Chatterjee, Kai Yu, Lynn R. Goldin, Alisa M. Goldstein, Melissa Rotunno, Lisa Mirabello, Kevin Jacobs, William Wheeler, Meredith Yeager, Andrew W. Bergen, Qizhai Li, Dario Consonni, Angela C. Pesatori, Sholom Wacholder, Michael Thun, Ryan Diver, Martin Oken, Jarmo Virtamo, Demetrius Albanes, Zhaoming Wang, Laurie Burdette, Kimberly F. Doheny, Elizabeth W. Pugh, Cathy Laurie, Paul Brennan, Rayjean Hung, Valerie Gaborieau, James D. McKay, Mark Lathrop, John McLaughlin, Ying Wang, Ming-Sound Tsao, Margaret R. Spitz, Yufei Wang, Hans Krokan, Lars Vatten, Frank Skorpen, Egil Arnesen, Simone Benhamou, Christine Bouchard, Andres Metsapalu, Tonu Vooder, Mari Nelis, Kristian Välk, John K. Field, Chu Chen, Gary Goodman, Patrick Sulem, Gudmar Thorleifsson, Thorunn Rafnar, Timothy Eisen, Wiebke Sauter, Albert Rosenberger, Heike Bickeböller, Angela Risch, Jenny Chang-Claude, H. Erich Wichmann, Kari Stefansson, Richard Houlston, Christopher I. Amos, Joseph F. Fraumeni, Sharon A. Savage, Pier Alberto Bertazzi, Margaret A. Tucker, Stephen Chanock, Neil E. Caporaso, A Genome-wide Association Study of Lung Cancer Identifies a Region of Chromosome 5p15 Associated with Risk for Adenocarcinoma. American Journal of Human Genetics. ,vol. 85, pp. 679- 691 ,(2009) , 10.1016/J.AJHG.2009.09.012
Kouya Shiraishi, Hideo Kunitoh, Yataro Daigo, Atsushi Takahashi, Koichi Goto, Hiromi Sakamoto, Sumiko Ohnami, Yoko Shimada, Kyota Ashikawa, Akira Saito, Shun-ichi Watanabe, Koji Tsuta, Naoyuki Kamatani, Teruhiko Yoshida, Yusuke Nakamura, Jun Yokota, Michiaki Kubo, Takashi Kohno, A genome-wide association study identifies two new susceptibility loci for lung adenocarcinoma in the Japanese population Nature Genetics. ,vol. 44, pp. 900- 903 ,(2012) , 10.1038/NG.2353
Andrew P. Morris, Transethnic meta-analysis of genomewide association studies. Genetic Epidemiology. ,vol. 35, pp. 809- 822 ,(2011) , 10.1002/GEPI.20630
Eugene P Rhee, Jennifer E Ho, Ming-Huei Chen, Dongxiao Shen, Susan Cheng, Martin G Larson, Anahita Ghorbani, Xu Shi, Iiro T Helenius, Christopher J O’Donnell, Amanda L Souza, Amy Deik, Kerry A Pierce, Kevin Bullock, Geoffrey A Walford, Ramachandran S Vasan, Jose C Florez, Clary Clish, J-R Joanna Yeh, Thomas J Wang, Robert E Gerszten, None, A Genome-wide Association Study of the Human Metabolome in a Community-Based Cohort Cell Metabolism. ,vol. 18, pp. 130- 143 ,(2013) , 10.1016/J.CMET.2013.06.013
Maria Teresa Landi, Dario Consonni, Melissa Rotunno, Andrew W Bergen, Alisa M Goldstein, Jay H Lubin, Lynn Goldin, Michael Alavanja, Glen Morgan, Amy F Subar, Ilona Linnoila, Fabrizio Previdi, Massimo Corno, Maurizia Rubagotti, Barbara Marinelli, Benedetta Albetti, Antonio Colombi, Margaret Tucker, Sholom Wacholder, Angela C Pesatori, Neil E Caporaso, Pier Alberto Bertazzi, Environment And Genetics in Lung cancer Etiology (EAGLE) study: An integrative population-based case-control study of lung cancer BMC Public Health. ,vol. 8, pp. 203- 203 ,(2008) , 10.1186/1471-2458-8-203
James D McKay, Rayjean J Hung, Valerie Gaborieau, Paolo Boffetta, Amelie Chabrier, Graham Byrnes, David Zaridze, Anush Mukeria, Neonilia Szeszenia-Dabrowska, Jolanta Lissowska, Peter Rudnai, Eleonora Fabianova, Dana Mates, Vladimir Bencko, Lenka Foretova, Vladimir Janout, John McLaughlin, Frances Shepherd, Alexandre Montpetit, Steven Narod, Hans E Krokan, Frank Skorpen, Maiken Bratt Elvestad, Lars Vatten, Inger Njølstad, Tomas Axelsson, Chu Chen, Gary Goodman, Matt Barnett, Melissa M Loomis, Jan Lubiñski, Joanna Matyjasik, Marcin Lener, Dorota Oszutowska, John Field, Triantafillos Liloglou, George Xinarianos, Adrian Cassidy, Diana Zelenika, Anne Boland, Marc Delepine, Mario Foglio, Doris Lechner, Fumihiko Matsuda, Helene Blanche, Ivo Gut, Simon Heath, Mark Lathrop, Paul Brennan, None, Lung cancer susceptibility locus at 5p15.33 Nature Genetics. ,vol. 40, pp. 1404- 1406 ,(2008) , 10.1038/NG.254
Jae-Jung Kim, Young-Mi Park, Dankyu Yoon, Kyung-Yil Lee, Min Seob Song, Hyoung Doo Lee, Kwi-Joo Kim, In-Sook Park, Hyo-Kyoung Nam, Sin Weon Yun, Myung Ki Han, Young Mi Hong, Gi Young Jang, Jong-Keuk Lee, None, Identification of KCNN2 as a susceptibility locus for coronary artery aneurysms in Kawasaki disease using genome-wide association analysis. Journal of Human Genetics. ,vol. 58, pp. 521- 525 ,(2013) , 10.1038/JHG.2013.43